Detail information of AT2G13370_circ_g.23


General Information
CircRNA Name AT2G13370_circ_g.23
ID in PlantcircBase ath_circ_013238
Alias NA
Organism Arabidpsis thaliana
Position chr2: 5553145-5555626  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene AT2G13370
Parent gene annotation Protein CHROMATIN REMODELING 5
Parent gene strand -
Alternative splicing AT2G13370_circ_g.1 AT2G13370_circ_g.2 AT2G13370_circ_g.3 AT2G13370_circ_g.4 AT2G13370_circ_g.5 AT2G13370_circ_g.6 AT2G13370_circ_g.7 AT2G13370_circ_g.8 AT2G13370_circ_g.9 AT2G13370_circ_g.10 AT2G13370_circ_g.11 AT2G13370_circ_g.12 AT2G13370_circ_g.13 AT2G13370_circ_g.14 AT2G13370_circ_g.15 AT2G13370_circ_g.16 AT2G13370_circ_g.17 AT2G13370_circ_g.18 AT2G13370_circ_g.19 AT2G13370_circ_g.20 AT2G13370_circ_g.21 AT2G13370_circ_g.22 AT2G13370_circ_g.24 AT2G13370_circ_g.25 AT2G13370_circ_g.26
Support reads 5
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G13370.2:5
AT2G13370.3:5
AT2G13370.1:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCCTAAAGAAAGCCATCTCGTCTCATGAAATCAGCAATTAAAGTAAGCGCTCTCCTTGCAGTC
GACAACAGCCACAATTCTTCTAACGTCTCAGTAGAActcctctcgcgagagtgctgtcctgtac
ctaatctcctccgtcactttctttgtatagttaagaaccttcttgaatccactaagctgtaaga
acacacaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1625
Transcript exons: 5553145-5553228,5553339-5553563,5553937-5554356,5554576-
5554643,5554799-5555626
CTCCTCTCGCGAGAGTGCTGTCCTGTACCTAATCTCCTCCGTCACTTTCTTTGTATAGTTAAGA
ACCTTCTTGAATCCACTAAGATTTTGGAGATCACTCAACGTTTTCCACTGACAATGCAAGTGTG
ATTGGCCTTTCCATTTTATAAGGAATTCCATTTCATTCCAATCTGGCTCAGTATCAAACAGTTG
GCTTACTAGAACAGGAACTGTTGATTTGTTATTTGTCTGAACATCTTCACCCATACCCTTCAGC
TGATGCCAGAGCACTTTTTCAATAACATCAGCATCCTCCTCTTCAATGTCATCCTTTTGGTTTT
TACGATTTTTCCCATCATCTATATCTTCACTGTCTTCACTCTCTACATAAGAGACTTTACGAAC
TGATCGGGTGGAGCTGCGAACTTCACTACTCTGTCCTATGGTATTGGTGGACCTTCCATTGTTT
TGTCGGAGAGTTGTGCCTCTTCTGGCCAGGCTTCTAAAACCCTCATCATTGTCATTTTCAGAGT
CTTCCTCTGAGTCGTCATCTTGATATGATGTTTTCCTCTTTTGTCGACTAGAAACATGGAATGA
TTTTCGTTCGAGTCCAGCGCTTGATTTCCGGAAACCTTTACTTTGTTGCCTAACCTTGGGCTTT
TTTGTTCCGTAGTCGTCCTCGTAATCGGAAAGATCAATTTCTTCATCACTCTCAGGGTCTTCAT
CAGAAACGTCCCAACCTTGGCCATGCTTTTTACTTGCACCACCATCATCAGCAGCATCATAGGG
CTCAAAGTCAGCATCTTCAGGGTCATCCTCATCTTCCTCCTCTTCATAGTCCATATCAGCATCC
CCATTGTGGTCATGATTACTATCACTATAGTGAATGTTTTTGTGAATTGCTCTTGAAGTCCTTG
AGTTGCTATGGACAGCAGATCCTGCCTTTGGCAGTGATCTAGAATTTGTAGGATTACTATACCC
TTTGTAGTGCACATGGTCGCTTTGATTATCTTCATCTTGTTCATAATATTCATCAGACAACATT
TCATCTGCTGGGACATCAGCTTGACCACTTTGATGCTTGTTCATTTCATTATCCTCCTCCTCAT
TTTCATTATCATTTTCATTTTCAGAATCTAACTTTTCACTCCGGTCATTTGAGTGATTATCTTC
ACTATGATATGCTTCTTTGTAACCGGATTGTGAATCTTTGGCAGGATCAGAACCCTCTCTTTGT
CCCATTGGCTGACAATCTTTCCAAAATGTGGAACCCCATCTACCAGTTACACCCAATCTCTTTG
TCGAAGATTGATAATGGGAATCCACAGGATCAGCTACATTATCAACTGCTGTCTCATTTGGCTG
CCTAATACTACATCCTGGTTCTGGGTCACTTTGATACTGTACGTCCATGTTCATGTCAAAGCCT
CTTTCACTATAAGTACCATCCACATCTTCATTCAAAGGTGAACTCTGAAAAGTAGCAGCATTTT
GCCGCTCCTCATTTTCATCAAGAACATTATGTGACACAGTATCGTTTGAGTAGTTCCTAAAGAA
AGCCATCTCGTCTCATGAAATCAGCAATTAAAGTAAGCGCTCTCCTTGCAGTCGACAACAGCCA
CAATTCTTCTAACGTCTCAGTAGAA

Genomic sequence CTCCTCTCGCGAGAGTGCTGTCCTGTACCTAATCTCCTCCGTCACTTTCTTTGTATAGTTAAGA
ACCTTCTTGAATCCACTAAGCTGTAAGAACACACAACATAGGTAAAGAAACAATAAAAATTAGC
ATTATCTAAAATATATGCAATACATTGATCAAAATTAAAATTAAAAAAGGAGTCCAAAGGACGT
ACATTTTGGAGATCACTCAACGTTTTCCACTGACAATGCAAGTGTGATTGGCCTTTCCATTTTA
TAAGGAATTCCATTTCATTCCAATCTGGCTCAGTATCAAACAGTTGGCTTACTAGAACAGGAAC
TGTTGATTTGTTATTTGTCTGAACATCTTCACCCATACCCTTCAGCTGATGCCAGAGCACTTTT
TCAATAACATCAGCATCCTCCTCTTCAATGTCATCCTAACGAGCATATATCAGATAAAAGGGAA
TAACATAACAAAAAAGTTCATTAAGTAGCTGGGCAAGGCTTCTAAAGAAATTGCTTTCATTCTA
GGCCAAGTAGTTGAAATTAATGGCTGCTCTAGGTCAAATAGTTGGAGTTAATCAAATCAAAAGA
CCGTAAGTTCTCCAAATTTAACATGTTTCCAACAGAAAGATAATATGTACGACGTGCAGATTAT
AACTATAGCAATGAGTTATTTAGACCGCTTTAGAGAAGGCTCATGAAACTACTGCCAGTCTCTA
TCAAATGTATTAGATTCCCACACGATAACATAAGCAAGTTGAGGGTGTAAAAATGTATAACCTT
AAAAAATGTAACAAGATATCATACCTTTTGGTTTTTACGATTTTTCCCATCATCTATATCTTCA
CTGTCTTCACTCTCTACATAAGAGACTTTACGAACTGATCGGGTGGAGCTGCGAACTTCACTAC
TCTGTCCTATGGTATTGGTGGACCTTCCATTGTTTTGTCGGAGAGTTGTGCCTCTTCTGGCCAG
GCTTCTAAAACCCTCATCATTGTCATTTTCAGAGTCTTCCTCTGAGTCGTCATCTTGATATGAT
GTTTTCCTCTTTTGTCGACTAGAAACATGGAATGATTTTCGTTCGAGTCCAGCGCTTGATTTCC
GGAAACCTTTACTTTGTTGCCTAACCTTGGGCTTTTTTGTTCCGTAGTCGTCCTCGTAATCGGA
AAGATCAATTTCTTCATCACTCTCAGGGTCTTCATCAGAAACGTCCCAACCTTGGCCATGCTAA
AATCAAACAACCACACAGTTGTAACATGTAAGAAATCCCATCAAAACTATAACAAGTAACAAGC
TAGAACACAACATGTTAACTATAAATGAAGATCCTTCCGAATAGCAAACTTAGTTAAGAAATGG
TTCAGAAAGTATCTCCCTTCTTTTGTTCAGTTTTAGCTTCATTGTGATGAACATGTATCCCAAC
ACAAGAATTGTAAGAAGTCAAACCTTTTTACTTGCACCACCATCATCAGCAGCATCATAGGGCT
CAAAGTCAGCATCTTCAGGGTCATCCTCTGATGAGAAATAAGATCAAATGTTACTGAAGTTCAA
ACCAAGCACTTGACGTGGGAAGTATTCAGAGGAAAAAACATAGACGTAAGTTCTAGTACTGCGT
ACAAACAAACAACAGAGTCAAATCTATTTAGGAATCCAAATTAAAAGAGTTTACCATCTTCCTC
CTCTTCATAGTCCATATCAGCATCCCCATTGTGGTCATGATTACTATCACTATAGTGAATGTTT
TTGTGAATTGCTCTTGAAGTCCTTGAGTTGCTATGGACAGCAGATCCTGCCTTTGGCAGTGATC
TAGAATTTGTAGGATTACTATACCCTTTGTAGTGCACATGGTCGCTTTGATTATCTTCATCTTG
TTCATAATATTCATCAGACAACATTTCATCTGCTGGGACATCAGCTTGACCACTTTGATGCTTG
TTCATTTCATTATCCTCCTCCTCATTTTCATTATCATTTTCATTTTCAGAATCTAACTTTTCAC
TCCGGTCATTTGAGTGATTATCTTCACTATGATATGCTTCTTTGTAACCGGATTGTGAATCTTT
GGCAGGATCAGAACCCTCTCTTTGTCCCATTGGCTGACAATCTTTCCAAAATGTGGAACCCCAT
CTACCAGTTACACCCAATCTCTTTGTCGAAGATTGATAATGGGAATCCACAGGATCAGCTACAT
TATCAACTGCTGTCTCATTTGGCTGCCTAATACTACATCCTGGTTCTGGGTCACTTTGATACTG
TACGTCCATGTTCATGTCAAAGCCTCTTTCACTATAAGTACCATCCACATCTTCATTCAAAGGT
GAACTCTGAAAAGTAGCAGCATTTTGCCGCTCCTCATTTTCATCAAGAACATTATGTGACACAG
TATCGTTTGAGTAGTTCCTAAAGAAAGCCATCTCGTCTCATGAAATCAGCAATTAAAGTAAGCG
CTCTCCTTGCAGTCGACAACAGCCACAATTCTTCTAACGTCTCAGTAGAA
Conservation Information
Conserved circRNAs NA
PMCS 0.192785909
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017