Detail information of AT2G13370_circ_g.26


General Information
CircRNA Name AT2G13370_circ_g.26
ID in PlantcircBase ath_circ_013241
Alias Ath_circ_FC1193, Ath_circ_FC1194
Organism Arabidpsis thaliana
Position chr2: 5553937-5555626  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder, circRNA_finder
Parent gene AT2G13370
Parent gene annotation Protein CHROMATIN REMODELING 5
Parent gene strand -
Alternative splicing AT2G13370_circ_g.1 AT2G13370_circ_g.2 AT2G13370_circ_g.3 AT2G13370_circ_g.4 AT2G13370_circ_g.5 AT2G13370_circ_g.6 AT2G13370_circ_g.7 AT2G13370_circ_g.8 AT2G13370_circ_g.9 AT2G13370_circ_g.10 AT2G13370_circ_g.11 AT2G13370_circ_g.12 AT2G13370_circ_g.13 AT2G13370_circ_g.14 AT2G13370_circ_g.15 AT2G13370_circ_g.16 AT2G13370_circ_g.17 AT2G13370_circ_g.18 AT2G13370_circ_g.19 AT2G13370_circ_g.20 AT2G13370_circ_g.21 AT2G13370_circ_g.22 AT2G13370_circ_g.23 AT2G13370_circ_g.24 AT2G13370_circ_g.25
Support reads 13
Tissues root, aerial, whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G13370.3:3
AT2G13370.2:3
AT2G13370.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCCTAAAGAAAGCCATCTCGTCTCATGAAATCAGCAATTAAAGTAAGCGCTCTCCTTGCAGTC
GACAACAGCCACAATTCTTCTAACGTCTCAGTAGAActtttggtttttacgatttttcccatca
tctatatcttcactgtcttcactctctacataagagactttacgaactgatcgggtggagctgc
gaacttca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1316
Transcript exons: 5553937-5554356,5554576-5554643,5554799-5555626
CTTTTGGTTTTTACGATTTTTCCCATCATCTATATCTTCACTGTCTTCACTCTCTACATAAGAG
ACTTTACGAACTGATCGGGTGGAGCTGCGAACTTCACTACTCTGTCCTATGGTATTGGTGGACC
TTCCATTGTTTTGTCGGAGAGTTGTGCCTCTTCTGGCCAGGCTTCTAAAACCCTCATCATTGTC
ATTTTCAGAGTCTTCCTCTGAGTCGTCATCTTGATATGATGTTTTCCTCTTTTGTCGACTAGAA
ACATGGAATGATTTTCGTTCGAGTCCAGCGCTTGATTTCCGGAAACCTTTACTTTGTTGCCTAA
CCTTGGGCTTTTTTGTTCCGTAGTCGTCCTCGTAATCGGAAAGATCAATTTCTTCATCACTCTC
AGGGTCTTCATCAGAAACGTCCCAACCTTGGCCATGCTTTTTACTTGCACCACCATCATCAGCA
GCATCATAGGGCTCAAAGTCAGCATCTTCAGGGTCATCCTCATCTTCCTCCTCTTCATAGTCCA
TATCAGCATCCCCATTGTGGTCATGATTACTATCACTATAGTGAATGTTTTTGTGAATTGCTCT
TGAAGTCCTTGAGTTGCTATGGACAGCAGATCCTGCCTTTGGCAGTGATCTAGAATTTGTAGGA
TTACTATACCCTTTGTAGTGCACATGGTCGCTTTGATTATCTTCATCTTGTTCATAATATTCAT
CAGACAACATTTCATCTGCTGGGACATCAGCTTGACCACTTTGATGCTTGTTCATTTCATTATC
CTCCTCCTCATTTTCATTATCATTTTCATTTTCAGAATCTAACTTTTCACTCCGGTCATTTGAG
TGATTATCTTCACTATGATATGCTTCTTTGTAACCGGATTGTGAATCTTTGGCAGGATCAGAAC
CCTCTCTTTGTCCCATTGGCTGACAATCTTTCCAAAATGTGGAACCCCATCTACCAGTTACACC
CAATCTCTTTGTCGAAGATTGATAATGGGAATCCACAGGATCAGCTACATTATCAACTGCTGTC
TCATTTGGCTGCCTAATACTACATCCTGGTTCTGGGTCACTTTGATACTGTACGTCCATGTTCA
TGTCAAAGCCTCTTTCACTATAAGTACCATCCACATCTTCATTCAAAGGTGAACTCTGAAAAGT
AGCAGCATTTTGCCGCTCCTCATTTTCATCAAGAACATTATGTGACACAGTATCGTTTGAGTAG
TTCCTAAAGAAAGCCATCTCGTCTCATGAAATCAGCAATTAAAGTAAGCGCTCTCCTTGCAGTC
GACAACAGCCACAATTCTTCTAACGTCTCAGTAGAA

Genomic sequence CTTTTGGTTTTTACGATTTTTCCCATCATCTATATCTTCACTGTCTTCACTCTCTACATAAGAG
ACTTTACGAACTGATCGGGTGGAGCTGCGAACTTCACTACTCTGTCCTATGGTATTGGTGGACC
TTCCATTGTTTTGTCGGAGAGTTGTGCCTCTTCTGGCCAGGCTTCTAAAACCCTCATCATTGTC
ATTTTCAGAGTCTTCCTCTGAGTCGTCATCTTGATATGATGTTTTCCTCTTTTGTCGACTAGAA
ACATGGAATGATTTTCGTTCGAGTCCAGCGCTTGATTTCCGGAAACCTTTACTTTGTTGCCTAA
CCTTGGGCTTTTTTGTTCCGTAGTCGTCCTCGTAATCGGAAAGATCAATTTCTTCATCACTCTC
AGGGTCTTCATCAGAAACGTCCCAACCTTGGCCATGCTAAAATCAAACAACCACACAGTTGTAA
CATGTAAGAAATCCCATCAAAACTATAACAAGTAACAAGCTAGAACACAACATGTTAACTATAA
ATGAAGATCCTTCCGAATAGCAAACTTAGTTAAGAAATGGTTCAGAAAGTATCTCCCTTCTTTT
GTTCAGTTTTAGCTTCATTGTGATGAACATGTATCCCAACACAAGAATTGTAAGAAGTCAAACC
TTTTTACTTGCACCACCATCATCAGCAGCATCATAGGGCTCAAAGTCAGCATCTTCAGGGTCAT
CCTCTGATGAGAAATAAGATCAAATGTTACTGAAGTTCAAACCAAGCACTTGACGTGGGAAGTA
TTCAGAGGAAAAAACATAGACGTAAGTTCTAGTACTGCGTACAAACAAACAACAGAGTCAAATC
TATTTAGGAATCCAAATTAAAAGAGTTTACCATCTTCCTCCTCTTCATAGTCCATATCAGCATC
CCCATTGTGGTCATGATTACTATCACTATAGTGAATGTTTTTGTGAATTGCTCTTGAAGTCCTT
GAGTTGCTATGGACAGCAGATCCTGCCTTTGGCAGTGATCTAGAATTTGTAGGATTACTATACC
CTTTGTAGTGCACATGGTCGCTTTGATTATCTTCATCTTGTTCATAATATTCATCAGACAACAT
TTCATCTGCTGGGACATCAGCTTGACCACTTTGATGCTTGTTCATTTCATTATCCTCCTCCTCA
TTTTCATTATCATTTTCATTTTCAGAATCTAACTTTTCACTCCGGTCATTTGAGTGATTATCTT
CACTATGATATGCTTCTTTGTAACCGGATTGTGAATCTTTGGCAGGATCAGAACCCTCTCTTTG
TCCCATTGGCTGACAATCTTTCCAAAATGTGGAACCCCATCTACCAGTTACACCCAATCTCTTT
GTCGAAGATTGATAATGGGAATCCACAGGATCAGCTACATTATCAACTGCTGTCTCATTTGGCT
GCCTAATACTACATCCTGGTTCTGGGTCACTTTGATACTGTACGTCCATGTTCATGTCAAAGCC
TCTTTCACTATAAGTACCATCCACATCTTCATTCAAAGGTGAACTCTGAAAAGTAGCAGCATTT
TGCCGCTCCTCATTTTCATCAAGAACATTATGTGACACAGTATCGTTTGAGTAGTTCCTAAAGA
AAGCCATCTCGTCTCATGAAATCAGCAATTAAAGTAAGCGCTCTCCTTGCAGTCGACAACAGCC
ACAATTCTTCTAACGTCTCAGTAGAA
Conservation Information
Conserved circRNAs NA
PMCS 0.274116052
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Chen et al., 2017a