Detail information of Os04g0540500_circ_g.4


General Information
CircRNA Name Os04g0540500_circ_g.4
ID in PlantcircBase osa_circ_024706
Alias NA
Organism Oryza sativa
Position chr4: 27037851-27038026  JBrowse»
Reference genome IRGSP-1.0.38
Type   ie-circRNA
Identification method CIRCexplorer
Parent gene Os04g0540500
Parent gene annotation Hypothetical protein. (Os04t0540500-01)
Parent gene strand -
Alternative splicing Os04g0540500_circ_g.1 Os04g0540500_circ_g.2 Os04g0540500_circ_g.3 Os04g0540500_circ_g.5
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   TA-AG
Number of exons covered Os04t0540500-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTAGTCATGAAGCATGACAAAAATTACAGTGATAATTAACCAAAAAATTAGAACTGTATATTCA
GTTACAGTGAGAAATAACAAAAATgttagaaaatcatgcttacctattattgtgcatcatatct
gatcttcatagaaaatttcatctagcacaaatttatgtatgtaaaaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTAGAAAATCATGCTTACCTATTATTGTGCATCATATCTGATCTTCATAGAAAATTTCATCTA
GCACAAATTTATGTATGTAAAAAATTAGTCATGAAGCATGACAAAAATTACAGTGATAATTAAC
CAAAAAATTAGAACTGTATATTCAGTTACAGTGAGAAATAACAAAAAT
Conservation Information
Conserved circRNAs NA
PMCS 0.168105587
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017