Detail information of Os04g0540500_circ_g.3


General Information
CircRNA Name Os04g0540500_circ_g.3
ID in PlantcircBase osa_circ_024705
Alias NA
Organism Oryza sativa
Position chr4: 27037779-27039283  JBrowse»
Reference genome IRGSP-1.0.38
Type   ie-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene Os04g0540500
Parent gene annotation Hypothetical protein. (Os04t0540500-01)
Parent gene strand -
Alternative splicing Os04g0540500_circ_g.1 Os04g0540500_circ_g.2 Os04g0540500_circ_g.4 Os04g0540500_circ_g.5
Support reads 1
Tissues seed
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os04t0540500-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATAGAACAAAGGCTGAAGTAACAAGGAATTCACAATCAGAGAGATGTGGAAGTGACAGAATTG
ACTCTGAAGAATTAAGAAGAAACAATACAGTTGAAGgggctgatagaacaaagtctcaagtaac
aggaaatacaactgaagaattaagaagaaagaagacagttgaaggttagaaaatcatgcttacc
tattattg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGGCTGATAGAACAAAGTCTCAAGTAACAGGAAATACAACTGAAGAATTAAGAAGAAAGAAGAC
AGTTGAAGGTTAGAAAATCATGCTTACCTATTATTGTGCATCATATCTGATCTTCATAGAAAAT
TTCATCTAGCACAAATTTATGTATGTAAAAAATTAGTCATGAAGCATGACAAAAATTACAGTGA
TAATTAACCAAAAAATTAGAACTGTATATTCAGTTACAGTGAGAAATAACAAAAATTACAACTG
TAACTGCAGTGCATATGGACTGTAACTGGACTATGACTGGAATCATGCATAACTTTGTCCAAAA
ATCCAATACTCATGCAACAACATCAACATTATTCCCTACTATAACATGATCTAAATCATATTAT
AAATTACCTAAATGATGGCCTATCTTCAACCAGAAAATCATGTCTACTATCAATGAAATTGAGA
ACTGAAATACTATTTCAAAACTTAACAAAATTACATAAGATTAGAACAGTCAGTTATAATTGCA
AATGTAACTGAGGTATAGTTCCACTGTAACTTCACTGAGTTGTACTGTAATTATGTTTTAAGTT
AGAATTATTGTAATTACATTTTGTAATGCTTTTATTTACATTTTGCAGGAACAATCTCAGCTGT
AGAATCAACTAAGGACATCAAGTTGGACACCAAGAAAAAAGAACCACTACAGATGAAAAGTACA
TAAACAACTATAAATAGATACTATATTGTTCCCAATTAACTCAAAATAGAAATCAAACTATTTT
GACCTATTGAACAAATTATATTAATGAACCTTTCATACTTACCAAACATAACACTGTAGTTTCT
CATGAAAACTTCAATTTTCTCCAGTTGCAGGTCATGAAGAAGTACAAGATGAAAAAAGAAGAAG
CCAAGAATCAGATAAGAGCAATATTATGGCAAAACATATTAAAGAAACCAAAAGTCAGACCACT
GAAGTTGTTCCAGGTCAGAATGGCATTGTTATTACTATATTCATGCAAATCTTTCAAGATACTA
TTGAAACATTGTAATTATAGTGGACTAGCATTCTAAACTTTGTATACAACTAAAGTTGAACTAT
AACAGACCTAATTTTGACTACATCTGAGTGATAAAAACTGCAAAGAATCTAATGACATAATTAC
AAAATTATGTCACTAAACTATATGCAGATTTTCCTATTCAAACGAAATCAAAATTAAGTACTTA
TATAAACACAAAACATGCACAAACACATACTTGTATTGAATTTCTATTTCAGTACTAATGCAAG
AACATCAGTATTAGTTCCTATTGTAGCTTCTATCAGAAATTCAGTACTCATGCAATAATATCAG
CATTACTTCGTATTGTAACATGTTCTAAAAATATTAATATAACCTAACACATGCAGGGGCTGAT
AGAACAAAGGCTGAAGTAACAAGGAATTCACAATCAGAGAGATGTGGAAGTGACAGAATTGACT
CTGAAGAATTAAGAAGAAACAATACAGTTGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.098125116
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017