Detail information of Os04g0540500_circ_g.1


General Information
CircRNA Name Os04g0540500_circ_g.1
ID in PlantcircBase osa_circ_024703
Alias Os_ciR3393
Organism Oryza sativa
Position chr4: 27035772-27039731  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method find_circ
Parent gene Os04g0540500
Parent gene annotation Hypothetical protein. (Os04t0540500-01)
Parent gene strand -
Alternative splicing Os04g0540500_circ_g.2 Os04g0540500_circ_g.3 Os04g0540500_circ_g.4 Os04g0540500_circ_g.5
Support reads 3
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os04t0540500-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCGACTCCAAAGAATTAAGAAGCAAGAAGACAATTCAAGGTCAGAAAATCATGCTTACCTGTC
ATTGGCACCATATATGATATTTGTAGAAATTTTCATatcatacagtgcacatatctctaacttt
tgcatcccaaaacatattctgttgatcacaactagtatgtccttcaatgaacatgatccctgta
ccgccaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATCATACAGTGCACATATCTCTAACTTTTGCATCCCAAAACATATTCTGTTGATCACAACTAGT
ATGTCCTTCAATGAACATGATCCCTGTACCGCCAAAATGAGGAGCAAAAAGAACAAATTTTACT
ACACTTCCAGCAACAAAAGAACCCAAGATTTATGAATGCTCAGAGGATAAGAATAATTTCTCTG
CTAACAAAACTTACCTTCACCCACGTTGACATCAATTTCCTGTACAACAGTTCAAAAAAAACAA
ATGATTGATTTCCTAGATAGCAAGCACAGCAGAAGACAATTCAAAAAAGGAACACAAAACAAAA
TATAAGGAACAAATATTTCATTTACTGACCATTGCTGTCATCCCACAATCCAAGCAGCTCCAAG
GCCCTTGCTCCCAGAATCAACACATGCAAGAGCAACAAAAGCCAAAACAAAGTTGCTAAAAAGT
ACACATATAACCCAGTCAATATCACACAGAGAACAATAGACCAAAAAAATGAAAATGTCATGTG
GACACATCTAAAAATTATAGATAAGAATATCTTGCACATCTGAAATTAGAGACAAAAATTCCTC
AACAGTTGCTATCTCAGATAACTTGTGAGATAACGGGCACCACACTAAACCTAAAAATTCCATG
CTAAGCAATGGAAGTAAACTAGAGACAGTATGTCAAGCTTCTATCAAGGAAGAAGCCTCAGGTC
AATCTATATTCTACCAAGAGAAATAGAGATAACAGAAAAAAAAACAGTACAAAACTAGGCCTAC
ATTACTAACTAGCAAAAAAAAAATATATCAGGCACATATCTAAGAAAATAAAGATGCCTAGGGT
TCCCCAAACTACAAGTCTCTGATAAAACCAATATCAATAATTAACAATCTAACTACCAATAGTC
AGTTACAGTGCGAAATAATAAAAATTACAACTGTAACTAAGGTATATTTCCACTGTAAGTGGTG
TGAGTTGCACTGTAAGTGTGTTTTAGGACTGCATGAAACCTAAAATATTGACTTCATCTGTTAA
ATCAAAGATTCAAAACTGAAAATACAATTTGAAAACTAAACTAAATCCCCAGATGAAAGAAGTG
GGCATCAAATACCATAACTAAATCAAAAAAGATACAAGGTTTAAGATCAGCCATTCAAATGCCT
CAAGAGATATATTTTTTGTGGGTAATTTCCTAATAGAAAACATATATTGAAGCTGACATCCACA
TAAATGCAACCAATAAAAAAACATGGAGCTATACATCCATAAATTTTTCTGCAAGAAAAAGTTT
GACGATCATAGAATTTACCTGGCTAGTTCTCCTTTTCTGTTTTAATGAAAGGAATAAGTAGACA
CATAAGAGTTATGTCCCGGGCAGCACTTGTTAAGCAAAAACAAAGCAGAATCTATGCAAGACAA
AGAAAGAAAGTTAATGTTGGTTGCATACATTAACAGACAACATAAATGAAGCGGCCTCACACTT
GCAATGGCACAAGAAGGCAAGCTAATTTCAGTAAAAACATCTAATTAATTCAAAAATGGATGAT
AACCCTACACTGCATTGACTGGAAAAAAAATCTACAACATAAGGGGAAGCAATACAAACTCACT
ATTGTTTTTATGAAACTAAAAGTACACATATTCTAACTTATGCATGCACAACTGACAAAAAAGA
GTCCCTAGGGTTCCCAAACTACAAGTGTCCTAGTTTTCACACAAATCAGTAATATACCCAAGGT
CAATCAATTACAAAATCTAACTACCAACAGTCAGTTACAGTGAGAGATAACAGAAATTACAACT
GTAACTTAGGTATATTTCCACTGTAACTGGACTGTAAATGGTGACGAGTTGTACTGTAAGTATG
TTTTAAGTTAGAATTACTGTAATTTCAGACTGCATGAAATCCAAAAATATTTAAGTTAGGTAGT
CAGATTACCTAGAACATATAAAACTAACATGCTTTTTAAATATTTCTATTACATGCACCAACCA
TACTTGATTTAAATTACATGCAGGGGCTGATAGAACAAAGTCTCAAGTAACAGGAAATACAACT
GAAGAATTAAGAAGAAAGAAGACAGTTGAAGGTTAGAAAATCATGCTTACCTATTATTGTGCAT
CATATCTGATCTTCATAGAAAATTTCATCTAGCACAAATTTATGTATGTAAAAAATTAGTCATG
AAGCATGACAAAAATTACAGTGATAATTAACCAAAAAATTAGAACTGTATATTCAGTTACAGTG
AGAAATAACAAAAATTACAACTGTAACTGCAGTGCATATGGACTGTAACTGGACTATGACTGGA
ATCATGCATAACTTTGTCCAAAAATCCAATACTCATGCAACAACATCAACATTATTCCCTACTA
TAACATGATCTAAATCATATTATAAATTACCTAAATGATGGCCTATCTTCAACCAGAAAATCAT
GTCTACTATCAATGAAATTGAGAACTGAAATACTATTTCAAAACTTAACAAAATTACATAAGAT
TAGAACAGTCAGTTATAATTGCAAATGTAACTGAGGTATAGTTCCACTGTAACTTCACTGAGTT
GTACTGTAATTATGTTTTAAGTTAGAATTATTGTAATTACATTTTGTAATGCTTTTATTTACAT
TTTGCAGGAACAATCTCAGCTGTAGAATCAACTAAGGACATCAAGTTGGACACCAAGAAAAAAG
AACCACTACAGATGAAAAGTACATAAACAACTATAAATAGATACTATATTGTTCCCAATTAACT
CAAAATAGAAATCAAACTATTTTGACCTATTGAACAAATTATATTAATGAACCTTTCATACTTA
CCAAACATAACACTGTAGTTTCTCATGAAAACTTCAATTTTCTCCAGTTGCAGGTCATGAAGAA
GTACAAGATGAAAAAAGAAGAAGCCAAGAATCAGATAAGAGCAATATTATGGCAAAACATATTA
AAGAAACCAAAAGTCAGACCACTGAAGTTGTTCCAGGTCAGAATGGCATTGTTATTACTATATT
CATGCAAATCTTTCAAGATACTATTGAAACATTGTAATTATAGTGGACTAGCATTCTAAACTTT
GTATACAACTAAAGTTGAACTATAACAGACCTAATTTTGACTACATCTGAGTGATAAAAACTGC
AAAGAATCTAATGACATAATTACAAAATTATGTCACTAAACTATATGCAGATTTTCCTATTCAA
ACGAAATCAAAATTAAGTACTTATATAAACACAAAACATGCACAAACACATACTTGTATTGAAT
TTCTATTTCAGTACTAATGCAAGAACATCAGTATTAGTTCCTATTGTAGCTTCTATCAGAAATT
CAGTACTCATGCAATAATATCAGCATTACTTCGTATTGTAACATGTTCTAAAAATATTAATATA
ACCTAACACATGCAGGGGCTGATAGAACAAAGGCTGAAGTAACAAGGAATTCACAATCAGAGAG
ATGTGGAAGTGACAGAATTGACTCTGAAGAATTAAGAAGAAACAATACAGTTGAAGGTTAGAAA
AAACATGCTTACCTATTATTATGCACCATATCTGATCTTTGTTGAAAATTTCATCTAGTACAAA
TTATATAAGGCAAAAATTAGAGGTGAAGCATGATAAATAAAAATAATCTAACTACCTTAATTCA
GTTACAGTTAGAAATAACAAAAGTTACAGCTGTAACTACAGTGCATATGGACTGTAACTGGAAT
CATGCTTAACTTTCTCCTAAAATTCAATAGCATCAGCATTATTCCATATTGTAACATGTTATAA
AATGACCCAAAACATGCAGGATGTCATAGATTGCAGGCTCAAGTTACAGGGAATACACAATCAA
AGACATGTGTAAGTGACATAATCGACTCCAAAGAATTAAGAAGCAAGAAGACAATTCAAGGTCA
GAAAATCATGCTTACCTGTCATTGGCACCATATATGATATTTGTAGAAATTTTCAT
Conservation Information
Conserved circRNAs osi_circ_014601
PMCS 0.089716317
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015