Detail information of Os02g0202250_circ_g.8


General Information
CircRNA Name Os02g0202250_circ_g.8
ID in PlantcircBase osa_circ_013720
Alias Os_ciR8336
Organism Oryza sativa
Position chr2: 5719562-5724343  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os02g0202250
Parent gene annotation Hypothetical conserved gene. (Os02t0202250-01)
Parent gene strand -
Alternative splicing Os02g0202250_circ_g.2 Os02g0202250_circ_g.3 Os02g0202250_circ_g.4 Os02g0202250_circ_g.5 Os02g0202250_circ_g.6 Os02g0202250_circ_g.7 Os02g0202250_circ_g.9 Os02g0202250_circ_g.10 Os02g0202250_circ_igg.1
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os02t0202250-01:11
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGCAACTGCCAGTTCCCACTTCTCCCGAGGATCGGCATAGGCTCTTTGAGGGAAAGGCCCAAAT
ACATCTTCGTAAACAAACTTAAATATACCCATAAACctttgattcaagtctcaggttagaaagc
atctgggggtatttaatggaagtgtccggacatctgaactggacaacttcaagcaaatccaaaa
cctgggtg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1345
Transcript exons: 5719562-5719654,5720544-5720726,5720801-5720878,5720966-
5721052,5721135-5721216,5721288-5721400,5721486-5721636,
5721759-5721877,5721966-5722163,5723837-5723957,5724224-
5724343
CTTTGATTCAAGTCTCAGGTTAGAAAGCATCTGGGGGTATTTAATGGAAGTGTCCGGACATCTG
AACTGGACAACTTCAAGCAAATCCAAAACCTTGTTTCCATTCATTGCTAAATTGCTACTGCCAG
GAGATTGTAACAGGTTTGCACTCCTTAAGTTCTCAGCACAATGGCCAAAAGTATGACATAGAAT
AGCCAAACAGGACTCCCGGTATAAGGACGATGATATATCAGATACATGCAATGCCAATGCTAGC
ATCTTTAGCAACCATGCCCTCTCATGGAGCATGCTAATACGAAGAGATTGATTGTTGTTCCTTC
TCGGAAGTGGTGACACACCAATGGTTCCAACATGCTTAGAAAAGAACTGGTATTTTGTTGTGCT
CAGGAGATCCATGACAGGCCCACAAGTTAAAGGGTCAAGGCATAACTCGTAGAGAAGCTGAAAA
CCGAATTCATGCAGTAAAGCATTTATATCTGGCTTTGTCACCTTTTCAAGATTGTCAAGAATTG
TCTTTAAACAACTGTAGTGTGACTTTGGTTTTAAAACTGTCCGTTCTATGGATCCATTGACATC
GAATCTTAGGAGTAGATGTGTAATGTTGGGAGCTGGACGACAAATATTGTCGATAAGTAGCTGT
AGTATTAGGACACCAACGTCATCTTTTGTGTTCTCTATGGCCTGGAAATCATCAAAGCGGAACT
CCAAGCAAGCAGCATAATCCTCAATTACCGATTTAGCAACATCTGCTTTCAGAAGCAACTGGAC
AAGACCAACTATTCTAGAACTCAGAATTCCCATAATTTTTATAGAGCACTGTTGAATCTGAGGA
AGATAATCATATCGTACAAACTCCAGTAAAGCTATAATATGTCTATGATTCTGAGCTAACACAA
CATCCAACGGCTGGTAGAGTGGACGGAAAACATCAGCAAGCACCAGATCTCTCTCCATCACAAG
AATAAATATTTCAAATGATAGATGGACAGTTTTCTCCAGAAGAATCCCATAAGTTTGGGTAGTT
CGCTCATTAATAAGAGTGTCCACACCCACTGATACGATGTTCATAATATTCCGGAAAGCAACTT
TCCCACTCATGAAATCTTTGAGTAGCTCAAGCACAGGGAGCTGTCTGTCGATTGAGGCATGAGA
TGTTGTTGAAGGTCCAGATGCGTTAACAGCAGCATAAATATCATCATCCTTGATGTCATACATG
CTTAAAACCATGCGGAAGTGCTCCAAGCAAGCAACTGCCAGTTCCCACTTCTCCCGAGGATCGG
CATAGGCTCTTTGAGGGAAAGGCCCAAATACATCTTCGTAAACAAACTTAAATATACCCATAAA
C

Genomic sequence CTTTGATTCAAGTCTCAGGTTAGAAAGCATCTGGGGGTATTTAATGGAAGTGTCCGGACATCTG
AACTGGACAACTTCAAGCAAATCCAAAACCTGGGTGAAAAAAATAACACATGAGATTTGCAGCA
CGGAAACATAGTTAACATTGTCTTATTTGCCAAGTGGGATATTTATGGAGTTTGTGATGTCCTG
ACTCCTGAATGTTGCGCCATCATAATTGCTCCAAAAAGACCTCAACATAGCCATCTAGCCCCTT
CATCCCTAATATACGGAGACTGTCTTCTAAAAGTTGGCGCTAGGCACCCCCTATATGGTGCATT
AGGTAGCTGAACTTGCTTGGGTGGTATTTAGTTGCTATTTTGGTGTTATATAACTAATTTTCAT
GTTATGCTTGCTAATTTCTTGGATCTGACTATCCGACCTAGGCACCCACTAGCCGCCGCCTAGG
CCTGACTAGCGCCTTCTTGAACCATGAAGGGATCCATTGTGGGAAGGTGGTTGGGGGTAAGATT
GGATGAAAATTAAATGAGGGGTGGTTGATTGGGGGAAGTAGGTACTCTAGAATCCCTTATATAT
TTTGGGACAAAATTTGAATCCTTGGATCCCTGATATTATGGGACAGGGAATAAGATGACCCCAC
TAGATGCAAGCTTCGTTACACTGACATGCATTTTGGAGTGTTATTAATCATGAGAAACAGAAGT
ACAGTACTTCCATAATCCAAGTGCTCTGAGTAGATGGGAAAGGCTTCCAGTAACATAAGAAATT
GTAGGCCCTGCCCCCAAAAAAAACTTTCTTCACAAGTACACATTTCCCTTAAAGATGGAATGCA
TTGACTGTGGATTTCCCTTAAAGATTTCTGATCAAAATCTGATAGAAGCACAAAGGAATACAAG
CAAAGGCCTGTACAAATAAAACTACATGGCACACCAATAAAGGGCCATATAAAAAAAATAGACA
GATAGAAGTTATTAAGCATTACCTTGTTTCCATTCATTGCTAAATTGCTACTGCCAGGAGATTG
TAACAGGTTTGCACTCCTTAAGTTCTCAGCACAATGGCCAAAAGTATGACATAGAATAGCCAAA
CAGGACTCCCGGTATAAGGACGATGATATATCAGATACATGCAATGCCAATGCTAGCATCTTTA
GCAACCATGCCCTCTGAAATTAACAAGTTGTAGATTAACAGGATGAAAAATGGGTGGCATCAAG
AAGTTTGTGCCTACAAATCATACCTCATGGAGCATGCTAATACGAAGAGATTGATTGTTGTTCC
TTCTCGGAAGTGGTGACACACCAATGGTTCCAACATGCTGGGAACAGTAAGCAAGAAAAGAATT
ATGACTTCCAATTCAACATTTAGCTATTTTAATTTAAAAGAACAAAACAAGAATGTGTACCTTA
GAAAAGAACTGGTATTTTGTTGTGCTCAGGAGATCCATGACAGGCCCACAAGTTAAAGGGTCAA
GGCATAACTCGTAGAGAAGCTGAATTAAAATGAGTCAAACGTACATTTTGACACTAAAGGATTA
AAATAAGGAGGTGGGTTCTATCCCTGAGAAAACAAACCTGAAAACCGAATTCATGCAGTAAAGC
ATTTATATCTGGCTTTGTCACCTTTTCAAGATTGTCAAGAATTGTCTTTAAACAACTGTGGCAC
AATATGATAATTCGTCAAACAAACCTTATGGCTATACAAAAAACAAAGAGCCTCGAGCTAACCT
GTAGTGTGACTTTGGTTTTAAAACTGTCCGTTCTATGGATCCATTGACATCGAATCTTAGGAGT
AGATGTGTAATGTTGGGAGCTGGACGACAAATATTGTCGATAAGTAGCTGCATGACAAAATGGT
TATTACAGTTAGAAGATAGGCATATTAAGTACACTACATAAAAGAAACACTAAAGCTGAAATAA
CGACCTGTAGTATTAGGACACCAACGTCATCTTTTGTGTTCTCTATGGCCTGGAAATCATCAAA
GCGGAACTCCAAGCAAGCAGCATAATCCTCAATTACCGATTTAGCAACATCTGCTTTCAGAAGC
AACTGGACAAGACCAACTATTCTAGAACTGCATAAAACAAAATGGTGAAAAGATTGGCACATTA
ATCTTAATTACTCTGATTGCAGGCGTAAACATGGAAAAAGGTAGACTTCACTAAATAGTAATCT
GGAACATAAATTTGGATATACCTCAGAATTCCCATAATTTTTATAGAGCACTGTTGAATCTGAG
GAAGATAATCATATCGTACAAACTCCAGTAAAGCTATAATATGTCTATGATTCTGAGCTAACAC
AACATCCAACGGCTGCATAGTGCAAAGAGTAACAGACACATCATTAGATAGAGAGAGGCATGAC
GAGCAAAAGAAAGATATTGACATAAAGAAAGAAAACCTGGTAGAGTGGACGGAAAACATCAGCA
AGCACCAGATCTCTCTCCATCACAAGAATAAATATTTCAAATGATAGATGGACAGTTTTCTCCA
GAAGAATCCCATAAGTTTGGGTAGTTCGCTCATTAATAAGAGTGTCCACACCCACTGATACGAT
GTTCATAATATTCCGGAAAGCAACTTTCCCACTCATGAAATCCTGCATTGGAATTTTACAACCC
AATATTTATACAGAACACATAGACACATATAGAAGTTCAAACAAAATATACATATCATTAAACA
TTATTAGAAACATCAGAATATTAGATGTATCAGTGAGATTGATATACCCCATAAAGCAAGAGCA
ACCAAGAAATCACATAAGATTCATATAAACTGAATTGATTGTCACGTGTTATCTGAATCTTACA
GGATTATGCTTTATTACAGGAATTGCAGACAAAATCACATGTGGGAGGGATAGAGTGCAGGACT
TCTAAAAAGAGAAAGTAAAGAGCTATAAGCTCATGTTTATTTTCCTGTGAAATAGAGGCATAAG
AAACCAACCCATATTGGTTTTTCCCGATTCTATTCCTTTCTTCCAAAGGCTGCATAAACTTTTC
CCAATAAATGAAATCTTCCAAACAACTCTATGAAATTCCTTCAAATCAAAGGAGCCTTAGGGCC
TCTTTGTTTAGGCTTAGGCTCATTGGCTTAGACTTTTAAGTTAGCTTTTTGGCTTATATGATTT
ACAAGGCAATGGATTTGAAATCCTAAGTTTAGTGGTGTAGTTATACCTCTATCTCACATAAGCT
AAAAAAGCTTCTCCAACCTAGCTTTTGGCTTAATAGTGTAAGAGTGGCTTATGGCTTTAAAAAA
GCCAAACGAAAAAGCCGTTTGTTTGTTTAGGCTTAGACTTTTCGGCTCAAAAGCTGGTTTATAA
GCCTAAACAAAGAGGACCTTAATCTGTTGAGAACATGAGCTGAGCAATGCAGAATCAACAGGTA
GTAAATTCCTGTCAATTGTTGTTTTTTCAAACTGACAACATTGTTATAAAGGTGGAATACGTGG
AAACAAAGCTCATAGGCCACCAATTGACAACTGCGCTCGATGTCCATTTTCCAGCCATAATCCA
ATGTATAGTAGTACTGTTTCTATTAGGATGCTCAACCTTTCTAGTTATGTAAAGTACACACTAG
GTGCGCAGTATGATGTACTAAAGGTGTCCTGGGCCAAATCAAAATGTACTGGATAAACACACAG
GACAATGAGTGCAATAAAAAAGAGAAGTATACTATGCCATCAAGTTTGCCTGGTTCCTGCCCCC
AAAATTAAATAGAAAATAAATAAAGTTTGCTCCATGTCTGCAATACGACATCAACTCCTCTCTT
CCTTCTATAATAATAAGCCATTGCCATCAATTTTGGCACCATTTGTGCAACTCAATGACAATAT
ACACCTTGCCAGGCCTATGAGCGCTCATCGGCAATGAGCTTATCCCCGATAGCTAGAATACTCT
GATCAAGCTAAATCTAACTGTGTTTCAATGTTTCTTGATTACAATTGGGCACATGGGTCCATTT
AGAGGAAGAGTTCCCCTGCCAGTATGAGGGTACTGCTAATGCACAATATCATTAACATAACACC
CTAGTCACTTCCTCTATTTCATTTCCCCAACCCCTCCCTTGCTCACTTGCCAGTATGCTGTGTG
TGACTAGACCTCCATGAGGCCATTTTTGGCCATTTGGAAAAGCTAAGGTAGCTAGCAGCAACAG
AACAAACTCAGGAACAAAATATTTTTATTGCAAGAAAATTATAGTAAGCTTGCCAATATTCACA
TTCAGCTTGCTTAAGATGTTAAAGCCACATGAGATCAACAATTGAACATACTTTGAGTAGCTCA
AGCACAGGGAGCTGTCTGTCGATTGAGGCATGAGATGTTGTTGAAGGTCCAGATGCGTTAACAG
CAGCATAAATATCATCATCCTTGATGTCATACATGCTTAAAACCCTGCACATTATCAATTGGCA
ATTTTTTTTAGAGCACCGTTGCATTGTATAACACATATGCATAAGTACTGAAGATGGCCTGTTC
TCTTTGAGGAAGACATCAAACTAATGGGATGAAAACTCTGAACACTTTGTGTACAACTTGATGT
GCATTTCTTTGAATATATTATATCAATAGGGTTCCCAACTATTTGTCATCCAAAAAATGACAAG
GTAAAAGAAAAAAAAAAAGCAAGTAATGGAACATATGCCAATCATTATGCTTACATGCGGAAGT
GCTCCAAGCAAGCAACTGCCAGTTCCCACTTCTCCCGAGGATCGGCATAGGCTCTTTGAGGGAA
AGGCCCAAATACATCTTCGTAAACAAACTTAAATATACCCATAAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.221085106
Functional Information
Coding potential Y
Potential coding position 5724341-5724328(-)
Potential amino acid sequence MGIFKFVYEDVFGPFPQRAYADPREKWELAVACLEHFRMVLSMYDIKDDDIYAAVNASGPSTTS
HASIDRQLPVLELLKDFMSGKVAFRNIMNIVSVGVDTLINERTTQTYGILLEKTVHLSFEIFIL
VMERDLVLADVFRPLYQPLDVVLAQNHRHIIALLEFVRYDYLPQIQQCSIKIMGILSSRIVGLV
QLLLKADVAKSVIEDYAACLEFRFDDFQAIENTKDDVGVLILQLLIDNICRPAPNITHLLLRFD
VNGSIERTVLKPKSHYSCLKTILDNLEKVTKPDINALLHEFGFQLLYELCLDPLTCGPVMDLLS
TTKYQFFSKHVGTIGVSPLPRRNNNQSLRISMLHERAWLLKMLALALHVSDISSSLYRESCLAI
LCHTFGHCAENLRSANLLQSPGSSNLAMNGNKVLDLLEVVQFRCPDTSIKYPQMLSNLRLESKV
YGYI*(-)
Sponge-miRNAs osa-miR2919
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015