Detail information of BGIOSGA018911_circ_ig.7


General Information
CircRNA Name BGIOSGA018911_circ_ig.7
ID in PlantcircBase osi_circ_015240
Alias Chr05:1191203_1196220(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr5: 1246747-1251549  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA018911_circ_ig.5 BGIOSGA018911_circ_ig.6 BGIOSGA018911_circ_ig.8 BGIOSGA018910_circ_igg.1 BGIOSGA018911_circ_ig.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-AA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTTCATAGTTAACCATTTTTTACCTGCATGAGCTTGATCATCAGCCATTTGTGCCATCCCTTT
GGACTGAAGAAATATCTTCAGTTCTTATATTGCAACatatatatatatatatatatatatatat
atatatatatgttagtacaagactacaagttgccaacacacagaaaaatattgttaagtataag
atacccag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATATATATATATATATATATATATATATATATATATATGTTAGTACAAGACTACAAGTTGCCAA
CACACAGAAAAATATTGTTAAGTATAAGATACCCAGCTTGCTAGCCAAAGCCACATTTGCACAA
TACTACCTCCATCCCAAAATGTTTGACGCCGTTGACTTTTTTAAAAATGTTTGACCATTCGTCT
TATTAAAAAAATTTAAGTAATTGTTAATTCTTTTTCTATCATTTGATTTATTGTTAAATATACT
TTTATGTATACATATAGTTTTGCACATATCACAAAAGTTTTTTAATAAAACGAACGGTCAAACA
TGTTTAAAAAAGTCAACGGTGTCAAATATTTAGGGAATGAGGGAGTACAATATAATCATAGGGT
TGGCAACATGAGACAAATATCAAGTTTCCTTTTTTAAAAGGAAAAATATTATCAAATTATAGCC
TCATGGGCAATATAGAAAAGCAAACGGCCTGGATCCAAGGTTCCTCCACTTGACTTGCTACTAT
TGAGAGCAAGTTGTGTGTTGGTGGTACTACTACCATTACACTGCTTATTCTCTTCTTTTTTTAT
TGAAAAACCTAGGAGGTTGCATTCCTGTGCACCATTTATTTCCTCGTCTCTGACTCTGAGTTAT
AAGTCGATAAGAGGAAAACTTTGACCTGGCCTGGCTCTTAACGATTGCCAGGAGACAGCACTGA
CTGCATCTATCCAGGGGCCCACCGCCAGTAGCTAATTTTCCTCGAGTATAACAGTATCCCTTTA
GGATCAACAAGTCCAAAAGGGTCGTCATTATCTGACTTGGCTAATCATGCAAGGAGATGCTACG
ATTCTAGACCTGTTTTCAAACGTTATGCAGGAACAAAATTGAAAGAACTTCAATACAAGTTGCT
CGAATTCCGGGAAGAGTCAAGAAGAAAGCTCTAGGATTCACTGTTCCTAGCAAGGACGGTAATT
TGACCACTGTTCAGTTTACGGCACATAACAACTGCCGTCAACTAAAAACCTTGAATAGTAGTAT
TGTAAAAGCCAAGAGAACATTGTACTTGCACGAGTTGCAAGTTGGAACATGAGTCTTTTCTAAG
TTCAAAATGGAGCTTAAGGTCATAGATTGCGGCGGTCTAGCTAGCATCATCATGCAATTGAAAA
GAAAAATGCAAAAAGTTCATTGAGAAACTGTAGCTTTCAACTACGTGGTTTACACGGGTGGGTT
GGACTACACAAGCTCTAGTGGAGAAGACATGATGGCTATATAGGCAGGGTAGACATACATGAGA
CCTGGTTTTTATCCTTAGACGTACGTCCTGGTGAAAGGACACGTCACACAACCATATACGTACG
AAGAAACTCTAGGAATCTATCGCTAATGAAAGTTCAAAGTGTTCTTTATAAACCCAGATAAAAA
GGTGTGCTCTATCCAATCTACCTAGCTCACATCTGAAGTAACCAGTATCAGAAAGTCCATGTAA
AGAAAGTAGAGGTGTAAACGATTAGTATCGTCCGGACAGAAGGCAACGTATCCAAAACACACTG
AACATATAACATATAGCGCATGAACTACTCCAGAACTAGAGACAAGACCGTCTGGAACATCTGA
AATATGTTTTATCAATGGTTTCCTATGAGCATCACTCTTTTTGGACGCCAACAGGAGTAGATCC
AATTACTGGTAACCAAGAATGGTAGTGCCGACACAGTGTGATGCAAAGAGAAAAGGACCACCAC
TAGGATGCCCCCTCTTTTCATCCACCGGCCCCTATCAGACTAGATTGGAAGCCCATCAGATCAA
TGGGAAAGAAACACTTTATAAATGGCCTCCCACAATAAATATATATCAGATATCATCCCTAGCT
GACTACACTATACAATAAAGAAATGTCAAAATGATTTGTTCTTGCTCAGCCAATATGAAAAATA
TCATAGTTTTATTCTATCGATGCTATGGTTGGTTTGTTGGGTCACTCTGTCGTGTATGTCCACT
ATAAAACGATTAGTTGTTCAATTTAGGTGTCTTGTGTCAAAGAGTTCAGGGATAAAATCAGTTC
AGCAAGGAATTATAAAGACTACTGCCATGTAACAGAATATATAAAAGTGTGAAAAAGAAGTGGC
AGCGGCTATAAATTACAAGTATCTATCTGTATACCCAGGCAATTGCCAAAAACAGTAGGTGTAG
CATGAATACAGACTCTGGTAGTTAAAGAAGATAACTTAAACTTTGGCCAACTTTTTTTTGTGCA
TAATATGGGCAATTTCTTAGGCAATCAGGTTACTGGGTTGCAACTTGCAGTGCGGTTGCTTTAG
GATGGCGGTCCCCAGTCACACAAATACTTCTCTGTTCAGAGCTTTCAAAGGGACCGCTCGGATA
AGGTAAGGGAAGCAGCTGGGGGATGCAACTGATGAATCAGGGAGGTGTACTTGTAACACCTACT
CTTGTGGAAAAAGGAGTAACTCTATGCATGGTCCTAGCTCCTATGCAACAACCCAATCTAATTG
GTTGGCATCTCGCTCTCGAACAAACGTTGCTAGCTTAGGCTCTCATGCCTCCTTCCAAACCTTG
GCCCAGGCAACTAATGGCCAATGCAAGACAGCCAAACTACTGGACACCCATGTTTGACTCCTAG
GTTAGAAACTTAGTAACACTTTCTCTCTTTATTCTTTTGTACTAGGCCTCACCATGTTTATGTC
TGGGACGGGAACCAATCCCGTTGTGCCAACCGAAAGGCAACTTAATTTAGCTGAGTCAGCAGTG
AACAACTTAACAGAAGTGGAGAAGGGGGTCCACGGCCAGTTAATTGAAAAAAGTGCTAAACTAA
AGGCGAGTTATAGAGGGAAAAATACTGCATGATGAGACATGACTCATGAGGACATGTTCAAATA
CCGAACTCTACAGCCAGGCCAGGTGCTTTGTACTATTATTAGACAAAGCACCATTAGAAGAACC
CGCATCCTGGGGAGCAAAGCTGTCCCTGGACAGAATCCAGTCTTCATGCATTCTTATATTCTTA
AATAATTATGTTCCGATGCACAATTAAAGTCAATGTCCTCAAATGGCAGCAGCCATAGCAATTA
TTCAAATACCGAATCACCAAATGAGGAAATCCACCAGCATATATGTTGAATACTTTCTGCTTTT
TTGGTGCATTTGGCAAATAAGTTGTCAGGTCATCCGATATTCTGGCAGGTGCATATTATTTCTG
TTAGTGCTTTAGATGGCCTATTAGTAATCATTTCATGCCCAAATTTGATGCTTCTAGATGCATG
CCCCTTTAGGCCAACCATGATAAACAAACTGCTCAGTAAACTAGTCTTACTAGCGATCCAAGAT
GCAACCCATCAAAATCGCACAAAAGGAAGCATTAGACTTTTAGTTTAATTGCCCAGCAATCAAG
ACCCAGTAAAGTGATTCTTCATGTCTACCAACAAGACAGTCCGGTTGCTTCACCTCAGTTGGCT
CCCCTTTTTTCTGAACGAAACAGTAGGTTCCCCTAGAACCTGGTTCCGTTTCTTTAAGCTCACA
AAAGCAAAAACCGTTGCTTAGTATACACTAATTCTTCAGTATATGCTATGCATATAATAGCAGC
ATGATGAGGATAGAAATTTTCAAGATAAATGGTTTTATTTCTCTAGGATGGAGTGAAGGGGGAC
AACTCTGCCCAGGGGGGGGCAAATGGATGAGCAGCTCAACTCCTAGATTGGATAAACAATGCCC
TCAGGAGGATTAAACAAGCCATGGTTTAGTCATAGTTGAGGATTTTAAAGAGGGAAAGGAGAAC
CCACAAGGTAGCAACTGTGGGCTGTGGCTTCTTTTATTCTGTGGGTGGAGGTGGAAAGAGGACC
TGATCTGGCACACGCACCATACGAGGTAATGTAGGTATATAAAATGGTATAGCAAGACGTGGAA
GATTGGTATCCGTTCTTAGAAAGTCCACAACTCCAGACCAAACGGGTCAGACCCTTTTTTCCCA
CTAACTAATAATTCAAGGTTCCGCAAAAAATATTAAATGTCCAAATCAAGGATTTTATAATACT
GTGTACGTTGCCTAGTAAGCGATCATCAGACAGCAGAGTCAAGCATATGGAAACGCAGAACAGA
ACAAATTTACTTTTTATGTAAATAAACAAGGTAACACGTAAATTCAAGGAATAATTTCCTGTAC
CTCAATTCGACACCACATTATCAGATGTCATCAAGGATGGAATCCTGCAAATTTCAGCCATTTC
AGGAGGTGACTTGTAGATATTTAGGCTGTAGTATGTAACTCCAATATCAGAATTGTGCCAATTA
ACTGATGATCAACATAATGGTATTTTTGCCATTTTTCTTCAGCTACTGACAACAAAATGGTATT
TTACCTTCTTGCAAAAAGAAATGGTATTTTACCTGTGAAGTTTGAGACGCAATCAGAATATCTG
AGTTTCATTGTAATAAGGGAGAACAGCAATACACAGCATATGGGCTGGGCCATAGATGGGCCAA
TTGGGTCAGAGCTATCTATAATACCTATTACCCTAACATTACTAATATTAATCCAGAAAAAGGC
TTAGTTTTAACTTATCTTGTAATGCCCATATGAATTTGCATAAACAACCTTCTCATACCAAAAA
TATTATCTGTTTCCAAAGCATTTTTTAGTTTAACGGTTTTGTTGGGAAATTACCATATTTTGTT
AGAAAAGTATTTGCCTGTTGCAAGTAATTTTTGTTCATAGTTAACCATTTTTTACCTGCATGAG
CTTGATCATCAGCCATTTGTGCCATCCCTTTGGACTGAAGAAATATCTTCAGTTCTTATATTGC
AAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021