Detail information of BGIOSGA018911_circ_ig.5


General Information
CircRNA Name BGIOSGA018911_circ_ig.5
ID in PlantcircBase osi_circ_015239
Alias Chr05:1189990_1194964(MH63RS2), Chr05:1189990_1194964(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr5: 1246575-1251549  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA018911_circ_ig.6 BGIOSGA018911_circ_ig.7 BGIOSGA018911_circ_ig.8 BGIOSGA018910_circ_igg.1 BGIOSGA018911_circ_ig.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTTCATAGTTAACCATTTTTTACCTGCATGAGCTTGATCATCAGCCATTTGTGCCATCCCTTT
GGACTGAAGAAATATCTTCAGTTCTTATATTGCAACcgttgctgcagcagtactggcaaatacc
gtggtcaaattggctgttgggcctccttgcacaactaggggtgaggtggtgggttagcatctct
gatggtac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGTTGCTGCAGCAGTACTGGCAAATACCGTGGTCAAATTGGCTGTTGGGCCTCCTTGCACAACT
AGGGGTGAGGTGGTGGGTTAGCATCTCTGATGGTACAAGGATTGCAATACACGCCAATCTTCTA
GGAAATCGAGGATAATTTTTTGCCTGCAAGTTGGACATCAACAAATATATATATATATATATAT
ATATATATATATATATATGTTAGTACAAGACTACAAGTTGCCAACACACAGAAAAATATTGTTA
AGTATAAGATACCCAGCTTGCTAGCCAAAGCCACATTTGCACAATACTACCTCCATCCCAAAAT
GTTTGACGCCGTTGACTTTTTTAAAAATGTTTGACCATTCGTCTTATTAAAAAAATTTAAGTAA
TTGTTAATTCTTTTTCTATCATTTGATTTATTGTTAAATATACTTTTATGTATACATATAGTTT
TGCACATATCACAAAAGTTTTTTAATAAAACGAACGGTCAAACATGTTTAAAAAAGTCAACGGT
GTCAAATATTTAGGGAATGAGGGAGTACAATATAATCATAGGGTTGGCAACATGAGACAAATAT
CAAGTTTCCTTTTTTAAAAGGAAAAATATTATCAAATTATAGCCTCATGGGCAATATAGAAAAG
CAAACGGCCTGGATCCAAGGTTCCTCCACTTGACTTGCTACTATTGAGAGCAAGTTGTGTGTTG
GTGGTACTACTACCATTACACTGCTTATTCTCTTCTTTTTTTATTGAAAAACCTAGGAGGTTGC
ATTCCTGTGCACCATTTATTTCCTCGTCTCTGACTCTGAGTTATAAGTCGATAAGAGGAAAACT
TTGACCTGGCCTGGCTCTTAACGATTGCCAGGAGACAGCACTGACTGCATCTATCCAGGGGCCC
ACCGCCAGTAGCTAATTTTCCTCGAGTATAACAGTATCCCTTTAGGATCAACAAGTCCAAAAGG
GTCGTCATTATCTGACTTGGCTAATCATGCAAGGAGATGCTACGATTCTAGACCTGTTTTCAAA
CGTTATGCAGGAACAAAATTGAAAGAACTTCAATACAAGTTGCTCGAATTCCGGGAAGAGTCAA
GAAGAAAGCTCTAGGATTCACTGTTCCTAGCAAGGACGGTAATTTGACCACTGTTCAGTTTACG
GCACATAACAACTGCCGTCAACTAAAAACCTTGAATAGTAGTATTGTAAAAGCCAAGAGAACAT
TGTACTTGCACGAGTTGCAAGTTGGAACATGAGTCTTTTCTAAGTTCAAAATGGAGCTTAAGGT
CATAGATTGCGGCGGTCTAGCTAGCATCATCATGCAATTGAAAAGAAAAATGCAAAAAGTTCAT
TGAGAAACTGTAGCTTTCAACTACGTGGTTTACACGGGTGGGTTGGACTACACAAGCTCTAGTG
GAGAAGACATGATGGCTATATAGGCAGGGTAGACATACATGAGACCTGGTTTTTATCCTTAGAC
GTACGTCCTGGTGAAAGGACACGTCACACAACCATATACGTACGAAGAAACTCTAGGAATCTAT
CGCTAATGAAAGTTCAAAGTGTTCTTTATAAACCCAGATAAAAAGGTGTGCTCTATCCAATCTA
CCTAGCTCACATCTGAAGTAACCAGTATCAGAAAGTCCATGTAAAGAAAGTAGAGGTGTAAACG
ATTAGTATCGTCCGGACAGAAGGCAACGTATCCAAAACACACTGAACATATAACATATAGCGCA
TGAACTACTCCAGAACTAGAGACAAGACCGTCTGGAACATCTGAAATATGTTTTATCAATGGTT
TCCTATGAGCATCACTCTTTTTGGACGCCAACAGGAGTAGATCCAATTACTGGTAACCAAGAAT
GGTAGTGCCGACACAGTGTGATGCAAAGAGAAAAGGACCACCACTAGGATGCCCCCTCTTTTCA
TCCACCGGCCCCTATCAGACTAGATTGGAAGCCCATCAGATCAATGGGAAAGAAACACTTTATA
AATGGCCTCCCACAATAAATATATATCAGATATCATCCCTAGCTGACTACACTATACAATAAAG
AAATGTCAAAATGATTTGTTCTTGCTCAGCCAATATGAAAAATATCATAGTTTTATTCTATCGA
TGCTATGGTTGGTTTGTTGGGTCACTCTGTCGTGTATGTCCACTATAAAACGATTAGTTGTTCA
ATTTAGGTGTCTTGTGTCAAAGAGTTCAGGGATAAAATCAGTTCAGCAAGGAATTATAAAGACT
ACTGCCATGTAACAGAATATATAAAAGTGTGAAAAAGAAGTGGCAGCGGCTATAAATTACAAGT
ATCTATCTGTATACCCAGGCAATTGCCAAAAACAGTAGGTGTAGCATGAATACAGACTCTGGTA
GTTAAAGAAGATAACTTAAACTTTGGCCAACTTTTTTTTGTGCATAATATGGGCAATTTCTTAG
GCAATCAGGTTACTGGGTTGCAACTTGCAGTGCGGTTGCTTTAGGATGGCGGTCCCCAGTCACA
CAAATACTTCTCTGTTCAGAGCTTTCAAAGGGACCGCTCGGATAAGGTAAGGGAAGCAGCTGGG
GGATGCAACTGATGAATCAGGGAGGTGTACTTGTAACACCTACTCTTGTGGAAAAAGGAGTAAC
TCTATGCATGGTCCTAGCTCCTATGCAACAACCCAATCTAATTGGTTGGCATCTCGCTCTCGAA
CAAACGTTGCTAGCTTAGGCTCTCATGCCTCCTTCCAAACCTTGGCCCAGGCAACTAATGGCCA
ATGCAAGACAGCCAAACTACTGGACACCCATGTTTGACTCCTAGGTTAGAAACTTAGTAACACT
TTCTCTCTTTATTCTTTTGTACTAGGCCTCACCATGTTTATGTCTGGGACGGGAACCAATCCCG
TTGTGCCAACCGAAAGGCAACTTAATTTAGCTGAGTCAGCAGTGAACAACTTAACAGAAGTGGA
GAAGGGGGTCCACGGCCAGTTAATTGAAAAAAGTGCTAAACTAAAGGCGAGTTATAGAGGGAAA
AATACTGCATGATGAGACATGACTCATGAGGACATGTTCAAATACCGAACTCTACAGCCAGGCC
AGGTGCTTTGTACTATTATTAGACAAAGCACCATTAGAAGAACCCGCATCCTGGGGAGCAAAGC
TGTCCCTGGACAGAATCCAGTCTTCATGCATTCTTATATTCTTAAATAATTATGTTCCGATGCA
CAATTAAAGTCAATGTCCTCAAATGGCAGCAGCCATAGCAATTATTCAAATACCGAATCACCAA
ATGAGGAAATCCACCAGCATATATGTTGAATACTTTCTGCTTTTTTGGTGCATTTGGCAAATAA
GTTGTCAGGTCATCCGATATTCTGGCAGGTGCATATTATTTCTGTTAGTGCTTTAGATGGCCTA
TTAGTAATCATTTCATGCCCAAATTTGATGCTTCTAGATGCATGCCCCTTTAGGCCAACCATGA
TAAACAAACTGCTCAGTAAACTAGTCTTACTAGCGATCCAAGATGCAACCCATCAAAATCGCAC
AAAAGGAAGCATTAGACTTTTAGTTTAATTGCCCAGCAATCAAGACCCAGTAAAGTGATTCTTC
ATGTCTACCAACAAGACAGTCCGGTTGCTTCACCTCAGTTGGCTCCCCTTTTTTCTGAACGAAA
CAGTAGGTTCCCCTAGAACCTGGTTCCGTTTCTTTAAGCTCACAAAAGCAAAAACCGTTGCTTA
GTATACACTAATTCTTCAGTATATGCTATGCATATAATAGCAGCATGATGAGGATAGAAATTTT
CAAGATAAATGGTTTTATTTCTCTAGGATGGAGTGAAGGGGGACAACTCTGCCCAGGGGGGGGC
AAATGGATGAGCAGCTCAACTCCTAGATTGGATAAACAATGCCCTCAGGAGGATTAAACAAGCC
ATGGTTTAGTCATAGTTGAGGATTTTAAAGAGGGAAAGGAGAACCCACAAGGTAGCAACTGTGG
GCTGTGGCTTCTTTTATTCTGTGGGTGGAGGTGGAAAGAGGACCTGATCTGGCACACGCACCAT
ACGAGGTAATGTAGGTATATAAAATGGTATAGCAAGACGTGGAAGATTGGTATCCGTTCTTAGA
AAGTCCACAACTCCAGACCAAACGGGTCAGACCCTTTTTTCCCACTAACTAATAATTCAAGGTT
CCGCAAAAAATATTAAATGTCCAAATCAAGGATTTTATAATACTGTGTACGTTGCCTAGTAAGC
GATCATCAGACAGCAGAGTCAAGCATATGGAAACGCAGAACAGAACAAATTTACTTTTTATGTA
AATAAACAAGGTAACACGTAAATTCAAGGAATAATTTCCTGTACCTCAATTCGACACCACATTA
TCAGATGTCATCAAGGATGGAATCCTGCAAATTTCAGCCATTTCAGGAGGTGACTTGTAGATAT
TTAGGCTGTAGTATGTAACTCCAATATCAGAATTGTGCCAATTAACTGATGATCAACATAATGG
TATTTTTGCCATTTTTCTTCAGCTACTGACAACAAAATGGTATTTTACCTTCTTGCAAAAAGAA
ATGGTATTTTACCTGTGAAGTTTGAGACGCAATCAGAATATCTGAGTTTCATTGTAATAAGGGA
GAACAGCAATACACAGCATATGGGCTGGGCCATAGATGGGCCAATTGGGTCAGAGCTATCTATA
ATACCTATTACCCTAACATTACTAATATTAATCCAGAAAAAGGCTTAGTTTTAACTTATCTTGT
AATGCCCATATGAATTTGCATAAACAACCTTCTCATACCAAAAATATTATCTGTTTCCAAAGCA
TTTTTTAGTTTAACGGTTTTGTTGGGAAATTACCATATTTTGTTAGAAAAGTATTTGCCTGTTG
CAAGTAATTTTTGTTCATAGTTAACCATTTTTTACCTGCATGAGCTTGATCATCAGCCATTTGT
GCCATCCCTTTGGACTGAAGAAATATCTTCAGTTCTTATATTGCAAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021