Detail information of BGIOSGA018911_circ_ig.6


General Information
CircRNA Name BGIOSGA018911_circ_ig.6
ID in PlantcircBase osi_circ_005920
Alias 5:1246576|1251549
Organism Oryza sativa ssp. indica
Position chr5: 1246576-1251549  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA018911_circ_ig.5 BGIOSGA018911_circ_ig.7 BGIOSGA018911_circ_ig.8 BGIOSGA018910_circ_igg.1 BGIOSGA018911_circ_ig.2
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTTCATAGTTAACCATTTTTTACCTGCATGAGCTTGATCATCAGCCATTTGTGCCATCCCTTT
GGACTGAAGAAATATCTTCAGTTCTTATATTGCAACgttgctgcagcagtactggcaaataccg
tggtcaaattggctgttgggcctccttgcacaactaggggtgaggtggtgggttagcatctctg
atggtaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTGCTGCAGCAGTACTGGCAAATACCGTGGTCAAATTGGCTGTTGGGCCTCCTTGCACAACTA
GGGGTGAGGTGGTGGGTTAGCATCTCTGATGGTACAAGGATTGCAATACACGCCAATCTTCTAG
GAAATCGAGGATAATTTTTTGCCTGCAAGTTGGACATCAACAAATATATATATATATATATATA
TATATATATATATATATGTTAGTACAAGACTACAAGTTGCCAACACACAGAAAAATATTGTTAA
GTATAAGATACCCAGCTTGCTAGCCAAAGCCACATTTGCACAATACTACCTCCATCCCAAAATG
TTTGACGCCGTTGACTTTTTTAAAAATGTTTGACCATTCGTCTTATTAAAAAAATTTAAGTAAT
TGTTAATTCTTTTTCTATCATTTGATTTATTGTTAAATATACTTTTATGTATACATATAGTTTT
GCACATATCACAAAAGTTTTTTAATAAAACGAACGGTCAAACATGTTTAAAAAAGTCAACGGTG
TCAAATATTTAGGGAATGAGGGAGTACAATATAATCATAGGGTTGGCAACATGAGACAAATATC
AAGTTTCCTTTTTTAAAAGGAAAAATATTATCAAATTATAGCCTCATGGGCAATATAGAAAAGC
AAACGGCCTGGATCCAAGGTTCCTCCACTTGACTTGCTACTATTGAGAGCAAGTTGTGTGTTGG
TGGTACTACTACCATTACACTGCTTATTCTCTTCTTTTTTTATTGAAAAACCTAGGAGGTTGCA
TTCCTGTGCACCATTTATTTCCTCGTCTCTGACTCTGAGTTATAAGTCGATAAGAGGAAAACTT
TGACCTGGCCTGGCTCTTAACGATTGCCAGGAGACAGCACTGACTGCATCTATCCAGGGGCCCA
CCGCCAGTAGCTAATTTTCCTCGAGTATAACAGTATCCCTTTAGGATCAACAAGTCCAAAAGGG
TCGTCATTATCTGACTTGGCTAATCATGCAAGGAGATGCTACGATTCTAGACCTGTTTTCAAAC
GTTATGCAGGAACAAAATTGAAAGAACTTCAATACAAGTTGCTCGAATTCCGGGAAGAGTCAAG
AAGAAAGCTCTAGGATTCACTGTTCCTAGCAAGGACGGTAATTTGACCACTGTTCAGTTTACGG
CACATAACAACTGCCGTCAACTAAAAACCTTGAATAGTAGTATTGTAAAAGCCAAGAGAACATT
GTACTTGCACGAGTTGCAAGTTGGAACATGAGTCTTTTCTAAGTTCAAAATGGAGCTTAAGGTC
ATAGATTGCGGCGGTCTAGCTAGCATCATCATGCAATTGAAAAGAAAAATGCAAAAAGTTCATT
GAGAAACTGTAGCTTTCAACTACGTGGTTTACACGGGTGGGTTGGACTACACAAGCTCTAGTGG
AGAAGACATGATGGCTATATAGGCAGGGTAGACATACATGAGACCTGGTTTTTATCCTTAGACG
TACGTCCTGGTGAAAGGACACGTCACACAACCATATACGTACGAAGAAACTCTAGGAATCTATC
GCTAATGAAAGTTCAAAGTGTTCTTTATAAACCCAGATAAAAAGGTGTGCTCTATCCAATCTAC
CTAGCTCACATCTGAAGTAACCAGTATCAGAAAGTCCATGTAAAGAAAGTAGAGGTGTAAACGA
TTAGTATCGTCCGGACAGAAGGCAACGTATCCAAAACACACTGAACATATAACATATAGCGCAT
GAACTACTCCAGAACTAGAGACAAGACCGTCTGGAACATCTGAAATATGTTTTATCAATGGTTT
CCTATGAGCATCACTCTTTTTGGACGCCAACAGGAGTAGATCCAATTACTGGTAACCAAGAATG
GTAGTGCCGACACAGTGTGATGCAAAGAGAAAAGGACCACCACTAGGATGCCCCCTCTTTTCAT
CCACCGGCCCCTATCAGACTAGATTGGAAGCCCATCAGATCAATGGGAAAGAAACACTTTATAA
ATGGCCTCCCACAATAAATATATATCAGATATCATCCCTAGCTGACTACACTATACAATAAAGA
AATGTCAAAATGATTTGTTCTTGCTCAGCCAATATGAAAAATATCATAGTTTTATTCTATCGAT
GCTATGGTTGGTTTGTTGGGTCACTCTGTCGTGTATGTCCACTATAAAACGATTAGTTGTTCAA
TTTAGGTGTCTTGTGTCAAAGAGTTCAGGGATAAAATCAGTTCAGCAAGGAATTATAAAGACTA
CTGCCATGTAACAGAATATATAAAAGTGTGAAAAAGAAGTGGCAGCGGCTATAAATTACAAGTA
TCTATCTGTATACCCAGGCAATTGCCAAAAACAGTAGGTGTAGCATGAATACAGACTCTGGTAG
TTAAAGAAGATAACTTAAACTTTGGCCAACTTTTTTTTGTGCATAATATGGGCAATTTCTTAGG
CAATCAGGTTACTGGGTTGCAACTTGCAGTGCGGTTGCTTTAGGATGGCGGTCCCCAGTCACAC
AAATACTTCTCTGTTCAGAGCTTTCAAAGGGACCGCTCGGATAAGGTAAGGGAAGCAGCTGGGG
GATGCAACTGATGAATCAGGGAGGTGTACTTGTAACACCTACTCTTGTGGAAAAAGGAGTAACT
CTATGCATGGTCCTAGCTCCTATGCAACAACCCAATCTAATTGGTTGGCATCTCGCTCTCGAAC
AAACGTTGCTAGCTTAGGCTCTCATGCCTCCTTCCAAACCTTGGCCCAGGCAACTAATGGCCAA
TGCAAGACAGCCAAACTACTGGACACCCATGTTTGACTCCTAGGTTAGAAACTTAGTAACACTT
TCTCTCTTTATTCTTTTGTACTAGGCCTCACCATGTTTATGTCTGGGACGGGAACCAATCCCGT
TGTGCCAACCGAAAGGCAACTTAATTTAGCTGAGTCAGCAGTGAACAACTTAACAGAAGTGGAG
AAGGGGGTCCACGGCCAGTTAATTGAAAAAAGTGCTAAACTAAAGGCGAGTTATAGAGGGAAAA
ATACTGCATGATGAGACATGACTCATGAGGACATGTTCAAATACCGAACTCTACAGCCAGGCCA
GGTGCTTTGTACTATTATTAGACAAAGCACCATTAGAAGAACCCGCATCCTGGGGAGCAAAGCT
GTCCCTGGACAGAATCCAGTCTTCATGCATTCTTATATTCTTAAATAATTATGTTCCGATGCAC
AATTAAAGTCAATGTCCTCAAATGGCAGCAGCCATAGCAATTATTCAAATACCGAATCACCAAA
TGAGGAAATCCACCAGCATATATGTTGAATACTTTCTGCTTTTTTGGTGCATTTGGCAAATAAG
TTGTCAGGTCATCCGATATTCTGGCAGGTGCATATTATTTCTGTTAGTGCTTTAGATGGCCTAT
TAGTAATCATTTCATGCCCAAATTTGATGCTTCTAGATGCATGCCCCTTTAGGCCAACCATGAT
AAACAAACTGCTCAGTAAACTAGTCTTACTAGCGATCCAAGATGCAACCCATCAAAATCGCACA
AAAGGAAGCATTAGACTTTTAGTTTAATTGCCCAGCAATCAAGACCCAGTAAAGTGATTCTTCA
TGTCTACCAACAAGACAGTCCGGTTGCTTCACCTCAGTTGGCTCCCCTTTTTTCTGAACGAAAC
AGTAGGTTCCCCTAGAACCTGGTTCCGTTTCTTTAAGCTCACAAAAGCAAAAACCGTTGCTTAG
TATACACTAATTCTTCAGTATATGCTATGCATATAATAGCAGCATGATGAGGATAGAAATTTTC
AAGATAAATGGTTTTATTTCTCTAGGATGGAGTGAAGGGGGACAACTCTGCCCAGGGGGGGGCA
AATGGATGAGCAGCTCAACTCCTAGATTGGATAAACAATGCCCTCAGGAGGATTAAACAAGCCA
TGGTTTAGTCATAGTTGAGGATTTTAAAGAGGGAAAGGAGAACCCACAAGGTAGCAACTGTGGG
CTGTGGCTTCTTTTATTCTGTGGGTGGAGGTGGAAAGAGGACCTGATCTGGCACACGCACCATA
CGAGGTAATGTAGGTATATAAAATGGTATAGCAAGACGTGGAAGATTGGTATCCGTTCTTAGAA
AGTCCACAACTCCAGACCAAACGGGTCAGACCCTTTTTTCCCACTAACTAATAATTCAAGGTTC
CGCAAAAAATATTAAATGTCCAAATCAAGGATTTTATAATACTGTGTACGTTGCCTAGTAAGCG
ATCATCAGACAGCAGAGTCAAGCATATGGAAACGCAGAACAGAACAAATTTACTTTTTATGTAA
ATAAACAAGGTAACACGTAAATTCAAGGAATAATTTCCTGTACCTCAATTCGACACCACATTAT
CAGATGTCATCAAGGATGGAATCCTGCAAATTTCAGCCATTTCAGGAGGTGACTTGTAGATATT
TAGGCTGTAGTATGTAACTCCAATATCAGAATTGTGCCAATTAACTGATGATCAACATAATGGT
ATTTTTGCCATTTTTCTTCAGCTACTGACAACAAAATGGTATTTTACCTTCTTGCAAAAAGAAA
TGGTATTTTACCTGTGAAGTTTGAGACGCAATCAGAATATCTGAGTTTCATTGTAATAAGGGAG
AACAGCAATACACAGCATATGGGCTGGGCCATAGATGGGCCAATTGGGTCAGAGCTATCTATAA
TACCTATTACCCTAACATTACTAATATTAATCCAGAAAAAGGCTTAGTTTTAACTTATCTTGTA
ATGCCCATATGAATTTGCATAAACAACCTTCTCATACCAAAAATATTATCTGTTTCCAAAGCAT
TTTTTAGTTTAACGGTTTTGTTGGGAAATTACCATATTTTGTTAGAAAAGTATTTGCCTGTTGC
AAGTAATTTTTGTTCATAGTTAACCATTTTTTACCTGCATGAGCTTGATCATCAGCCATTTGTG
CCATCCCTTTGGACTGAAGAAATATCTTCAGTTCTTATATTGCAAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021