Detail information of AT2G26080_circ_g.4


General Information
CircRNA Name AT2G26080_circ_g.4
ID in PlantcircBase ath_circ_014867
Alias 2:11109914-11112388
Organism Arabidpsis thaliana
Position chr2: 11109914-11112388  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G26080
Parent gene annotation Glycine dehydrogenase (decarboxylating) 2, mitochondrial
Parent gene strand -
Alternative splicing AT2G26080_circ_g.1 AT2G26080_circ_g.2 AT2G26080_circ_g.3 AT2G26080_circ_g.5 AT2G26080_circ_g.6 AT2G26080_circ_g.7 AT2G26080_circ_g.8 AT2G26080_circ_g.9 AT2G26080_circ_g.10 AT2G26080_circ_g.11 AT2G26080_circ_g.12 AT2G26080_circ_g.13 AT2G26080_circ_g.14 AT2G26080_circ_g.15 AT2G26080_circ_g.16 AT2G26080_circ_g.17 AT2G26080_circ_g.18 AT2G26080_circ_g.19
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G26080.1:11
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAAATACACCAGCGAGACCATGAACCCGTTGTGCAATAGATTTTAAGCCTTCTGGTCCATGGTA
AACAGCATACATAGCAGTCATATTTGCAAGCAAGGCcttgctttcgctttcggttggctcgatc
ataagcgttccagggacaggccaagacattgtcggtccatggaaaccataatccatcaatcgtt
tggccaca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1593
Transcript exons: 11109914-11110039,11110122-11110199,11110286-11110474,11
110572-11110724,11110800-11110913,11111007-11111192,1111
1275-11111400,11111474-11111669,11111767-11111867,111119
60-11112037,11112143-11112388
CTTGCTTTCGCTTTCGGTTGGCTCGATCATAAGCGTTCCAGGGACAGGCCAAGACATTGTCGGT
CCATGGAAACCATAATCCATCAATCGTTTGGCCACATCCTCTGGTTCAATTCCAGCAGTGTTCT
TGAATCCTCTCAAGTCAATGATGAATTCGTGAGCGACTGTTCCATTGACACCACGGAAAAGAAC
TGGGTAGTGGCTCTCCAGACGCTTTGCCATGTAGTTAGCGTTCAAAATTGCAATCTTTGAGGCA
TCGGTGAGTCCTCCAGATCCCATCATGGCAATGTAAGTATACGAGATTGGCAAGATAAGCGCAG
ACCCCCATGGTGCTGCAGAAATGGTTCCCAGCGGTGATGTCTGCTCGGGTTCAGGGATACCACC
GGTAGGTATCACTGGGTGAGAAGGTAGGAATGGAGCCAAATGTTGCTTCACACCGATAGGGCCC
ATTCCGGGACCTCCACCTCCGTGAGGGATACAGAAGGTCTTGTGGAGATTGAGATGGCAAACAT
CCGCTCCAATAAAACCAGGGCTTGTCAAACCCACCTGTGCATTCATATTAGCACCATCCATATA
AACTTGGCCTCCATTTTCATGAATTATGTTGCAGATCTCGTCGATACCCTCTTCGTAGACTCCA
TGGGTGGAAGGGTATGTAACCATAAGAGCAGCCAAGTTGTCCTTGTTGGCTTCGGCGGCGTTCC
TCAACTCTTCGATGTTAATGTTTCCTTTGGCATCAGTTCCAACGGCAACAATTTTCATTCCGCA
CATGGCAGCACTAGCAGGGTTTGTCCCGTGTGCAGAAACAGGTATGATGCACACATTTCTGTGA
TGATCGCCTCTTGACATATGATATGCACGGATAACCATGAGCCCGGCGTACTCGCCAGCAGCAC
CGGCATTAGGTTGCAATGAGAAAGAGTCGAATCCAGTGATCGTACATAAGAGCTCACCCAAATT
CGTAAACATTTCCTGATAACCTTGGGCTTGTTCAACAGGAGCAAAAGGGTGCATGTTGGTGAAA
CTTGGCCATGTGACTGGCATCATTTCAGTGGTGGCATTCAATTTCATCGTACAAGATCCAAGTG
GAATCATGCTGTGGCACAATGATAGATCTTTATTTTGTAACTTGTGGATGTACCTAAGCAACTC
ATGCTCCGTGTGGTACATGTTGAAGATTGGATGGGTCAGATAAGGGCTCTCTCTTGTTAGGCTA
GAGGGAATAGCATTGTTAAACTCCGGTGCAAGAGACTCAGCCGTGAATTGAACGGGCTTGCCCG
AAGCAAAAACTTCAAAAAGTTTATCGACATCATCCAAGGTGGTTGTTTCATCGAAAGCAACAGT
AATAGTGTTGGAGTCCACAAGACGCAAATTGATCTCCTTCTTGGCTGCCACATCAAAAATTGCA
GTTGCATCTGAACATGTAACTTTGACAGTGTCAAAGAAGGGAAGATCTTGGACTTGTGCAGTTC
CCAGTTTCTTCAATCCTAAGGCAAATACACCAGCGAGACCATGAACCCGTTGTGCAATAGATTT
TAAGCCTTCTGGTCCATGGTAAACAGCATACATAGCAGTCATATTTGCAAGCAAGGC

Genomic sequence CTTGCTTTCGCTTTCGGTTGGCTCGATCATAAGCGTTCCAGGGACAGGCCAAGACATTGTCGGT
CCATGGAAACCATAATCCATCAATCGTTTGGCCACATCCTCTGGTTCAATTCCAGCAGTGTTCT
GAGGACATTGAACAAGACATTGATTTAGCATGTACAACCAAAAAACAGAGCATTTACTCAAACG
AGATAAAGAAACATACCTTGAATCCTCTCAAGTCAATGATGAATTCGTGAGCGACTGTTCCATT
GACACCACGGAAAAGAACTGGGTAGTGGCTCTGAAAGACAAGAAAGCATAAGTGAGGTTGCACA
AGAGAAGAGACGTTCACTCTCTTTAAAGAGTTGTCAAGATAAGATAAGGTACCTCCAGACGCTT
TGCCATGTAGTTAGCGTTCAAAATTGCAATCTTTGAGGCATCGGTGAGTCCTCCAGATCCCATC
ATGGCAATGTAAGTATACGAGATTGGCAAGATAAGCGCAGACCCCCATGGTGCTGCAGAAATGG
TTCCCAGCGGTGATGTCTGCTCGGGTTCAGGGATACCACCGGTAGGTATCTGTAGCAGAGTAAA
CAGAATGAGTACAAAAAAGCAGATAACTCAATCATTGAGAAAGATGGATTAGCGATCATAACAT
ATAAGAATTAACACTAACCACTGGGTGAGAAGGTAGGAATGGAGCCAAATGTTGCTTCACACCG
ATAGGGCCCATTCCGGGACCTCCACCTCCGTGAGGGATACAGAAGGTCTTGTGGAGATTGAGAT
GGCAAACATCCGCTCCAATAAAACCAGGGCTTGTCAAACCCACCTGGAAGTTCCAAAAACTTTC
TCAAATTCACAACTTTTGGATTCTTCAGTCAACATACCAGCAGAGAAACCATACCTGTGCATTC
ATATTAGCACCATCCATATAAACTTGGCCTCCATTTTCATGAATTATGTTGCAGATCTCGTCGA
TACCCTCTTCGTAGACTCCATGGGTGGAAGGGTATGTAACCTAATATTCAAACAGAAGTTGTAG
AATTAGAAAGTGGATTGACCCAAAAGTGACATTGTTTCATCTATAGTGATGAAAGAAGTAAATA
CATACCATAAGAGCAGCCAAGTTGTCCTTGTTGGCTTCGGCGGCGTTCCTCAACTCTTCGATGT
TAATGTTTCCTTTGGCATCAGTTCCAACGGCAACAATTTTCATTCCGCACATGGCAGCACTAGC
AGGGTTTGTCCCGTGTGCAGAAACAGGTATGATGCACACATTTCTGTGATGATCGCCTCTTGAC
TGCATCATTTATTCACCCATTTACCAAATTTGTTGAAGTGCGAGTTCATATTGGAAAACAAGAA
ACTACAGGTATGCTTACCATATGATATGCACGGATAACCATGAGCCCGGCGTACTCGCCAGCAG
CACCGGCATTAGGTTGCAATGAGAAAGAGTCGAATCCAGTGATCGTACATAAGAGCTCACCCAA
ATTCGTAAACATTTCCTATAAGTTGTCAAACAAAAAATTCAGTACGTAGTTAAATTTCTAGTCA
GGTAAATCAAATATGTGGCCTCACCTGATAACCTTGGGCTTGTTCAACAGGAGCAAAAGGGTGC
ATGTTGGTGAAACTTGGCCATGTGACTGGCATCATTTCAGTGGTGGCATTCAATTTCATCGTAC
AAGATCCAAGTGGAATCATGCTGTGGCACAATGATAGATCTTTATTTTGTAACTTGTGGATGTA
CCTAAGCAACTCATGCTCCGTGTGGTACCTAACCAAATGTAAGAAAAAAGGGAAAGTAAATGTG
AGGTACTTAACAATAAGCCACAGGGCAATGAAGGAACCAAGATTTAAAGAAGGTAACATACATG
TTGAAGATTGGATGGGTCAGATAAGGGCTCTCTCTTGTTAGGCTAGAGGGAATAGCATTGTTAA
ACTCCGGTGCAAGAGACTCAGCCGTGAATTGAACCTTGTACATTGGAGAAAACATTATTTTAAG
CAAACACGAAAAAAAAGAGTGAACAAGCGAGATGAATGGATATTAGCTTAAAGTAAACTCACGG
GCTTGCCCGAAGCAAAAACTTCAAAAAGTTTATCGACATCATCCAAGGTGGTTGTTTCATCGAA
AGCAACAGTAATCTTAAAGAACAAGAAAAAAAACCCATCAATGTTAATAATCATATCCAGATAT
TGAAGAAATATATATATATATATATATATATATATATATATGAAGAAACTCACAGTGTTGGAGT
CCACAAGACGCAAATTGATCTCCTTCTTGGCTGCCACATCAAAAATTGCAGTTGCATCTGAACA
TGTAACTTTGACAGTGTCAAAGAAGGGAAGATCTTGGACTTGTGCAGTTCCCAGTTTCTTCAAT
CCTAAGGCAAATACACCAGCGAGACCATGAACCCGTTGTGCAATAGATTTTAAGCCTTCTGGTC
CATGGTAAACAGCATACATAGCAGTCATATTTGCAAGCAAGGC
Conservation Information
Conserved circRNAs NA
PMCS 0.213534447
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020