Detail information of AT2G26080_circ_g.5


General Information
CircRNA Name AT2G26080_circ_g.5
ID in PlantcircBase ath_circ_014868
Alias 2:11109967-11110312
Organism Arabidpsis thaliana
Position chr2: 11109967-11110312  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G26080
Parent gene annotation Glycine dehydrogenase (decarboxylating) 2, mitochondrial
Parent gene strand -
Alternative splicing AT2G26080_circ_g.1 AT2G26080_circ_g.2 AT2G26080_circ_g.3 AT2G26080_circ_g.4 AT2G26080_circ_g.6 AT2G26080_circ_g.7 AT2G26080_circ_g.8 AT2G26080_circ_g.9 AT2G26080_circ_g.10 AT2G26080_circ_g.11 AT2G26080_circ_g.12 AT2G26080_circ_g.13 AT2G26080_circ_g.14 AT2G26080_circ_g.15 AT2G26080_circ_g.16 AT2G26080_circ_g.17 AT2G26080_circ_g.18 AT2G26080_circ_g.19
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT2G26080.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGCATAAGTGAGGTTGCACAAGAGAAGAGACGTTCACTCTCTTTAAAGAGTTGTCAAGATAAG
ATAAGGTACCTCCAGACGCTTTGCCATGTAGTTAGCacattgtcggtccatggaaaccataatc
catcaatcgtttggccacatcctctggttcaattccagcagtgttctgaggacattgaacaaga
cattgatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ACATTGTCGGTCCATGGAAACCATAATCCATCAATCGTTTGGCCACATCCTCTGGTTCAATTCC
AGCAGTGTTCTGAGGACATTGAACAAGACATTGATTTAGCATGTACAACCAAAAAACAGAGCAT
TTACTCAAACGAGATAAAGAAACATACCTTGAATCCTCTCAAGTCAATGATGAATTCGTGAGCG
ACTGTTCCATTGACACCACGGAAAAGAACTGGGTAGTGGCTCTGAAAGACAAGAAAGCATAAGT
GAGGTTGCACAAGAGAAGAGACGTTCACTCTCTTTAAAGAGTTGTCAAGATAAGATAAGGTACC
TCCAGACGCTTTGCCATGTAGTTAGC
Conservation Information
Conserved circRNAs NA
PMCS 0.248118716
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020