Detail information of AT2G26080_circ_g.11


General Information
CircRNA Name AT2G26080_circ_g.11
ID in PlantcircBase ath_circ_014874
Alias At_ciR899
Organism Arabidpsis thaliana
Position chr2: 11110800-11111192  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ, CIRI-full
Parent gene AT2G26080
Parent gene annotation Glycine dehydrogenase (decarboxylating) 2, mitochondrial
Parent gene strand -
Alternative splicing AT2G26080_circ_g.1 AT2G26080_circ_g.2 AT2G26080_circ_g.3 AT2G26080_circ_g.4 AT2G26080_circ_g.5 AT2G26080_circ_g.6 AT2G26080_circ_g.7 AT2G26080_circ_g.8 AT2G26080_circ_g.9 AT2G26080_circ_g.10 AT2G26080_circ_g.12 AT2G26080_circ_g.13 AT2G26080_circ_g.14 AT2G26080_circ_g.15 AT2G26080_circ_g.16 AT2G26080_circ_g.17 AT2G26080_circ_g.18 AT2G26080_circ_g.19
Support reads 7
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G26080.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGGCAACAATTTTCATTCCGCACATGGCAGCACTAGCAGGGTTTGTCCCGTGTGCAGAAACAGG
TATGATGCACACATTTCTGTGATGATCGCCTCTTGActgtgcattcatattagcaccatccata
taaacttggcctccattttcatgaattatgttgcagatctcgtcgataccctcttcgtagactc
catgggtg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 300
Transcript exons: 11110800-11110913,11111007-11111192
CTGTGCATTCATATTAGCACCATCCATATAAACTTGGCCTCCATTTTCATGAATTATGTTGCAG
ATCTCGTCGATACCCTCTTCGTAGACTCCATGGGTGGAAGGGTATGTAACCATAAGAGCAGCCA
AGTTGTCCTTGTTGGCTTCGGCGGCGTTCCTCAACTCTTCGATGTTAATGTTTCCTTTGGCATC
AGTTCCAACGGCAACAATTTTCATTCCGCACATGGCAGCACTAGCAGGGTTTGTCCCGTGTGCA
GAAACAGGTATGATGCACACATTTCTGTGATGATCGCCTCTTGA

Genomic sequence CTGTGCATTCATATTAGCACCATCCATATAAACTTGGCCTCCATTTTCATGAATTATGTTGCAG
ATCTCGTCGATACCCTCTTCGTAGACTCCATGGGTGGAAGGGTATGTAACCTAATATTCAAACA
GAAGTTGTAGAATTAGAAAGTGGATTGACCCAAAAGTGACATTGTTTCATCTATAGTGATGAAA
GAAGTAAATACATACCATAAGAGCAGCCAAGTTGTCCTTGTTGGCTTCGGCGGCGTTCCTCAAC
TCTTCGATGTTAATGTTTCCTTTGGCATCAGTTCCAACGGCAACAATTTTCATTCCGCACATGG
CAGCACTAGCAGGGTTTGTCCCGTGTGCAGAAACAGGTATGATGCACACATTTCTGTGATGATC
GCCTCTTGA
Conservation Information
Conserved circRNAs NA
PMCS 0.379984518
Functional Information
Coding potential Y
Potential coding position 11111118-11110802(-)
Potential amino acid sequence MCGMKIVAVGTDAKGNINIEELRNAAEANKDNLAALMVTYPSTHGVYEEGIDEICNIIHENGGQ
VYMDGANMNAQSRGDHHRNVCIIPVSAHGTNPASAAMCGMKIVAVGTDAKGNINIEELRNAAEA
NKDNLAALMVTYPSTHGVYEEGIDEICNIIHENGGQVYMDGANMNAQSRGDHHRNVCIIPVSAH
GTNPASAAMCGMKIVAVGTDAKGNINIEELRNAAEANKDNLAALMVTYPSTHGVYEEGIDEICN
IIHENGGQVYMDGANMNAQSRGDHHRNVCIIPVSAHGTNPASAAMCGMKIVAVGTDAKGNINIE
ELRNAAEANKDNLAALMVTYPSTHGVYEEGIDEICNIIHENGGQVYMDGANMNAQ(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015