Detail information of BGIOSGA016933_circ_g.5


General Information
CircRNA Name BGIOSGA016933_circ_g.5
ID in PlantcircBase osi_circ_014663
Alias Chr04:28978053_28980748(MH63RS2), Chr04:29021177_29023872(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 27218897-27221592  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRI2
Parent gene BGIOSGA016933
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016933_circ_g.2 BGIOSGA016933_circ_g.3 BGIOSGA016933_circ_g.4 BGIOSGA016933_circ_g.6
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-CA
Number of exons covered BGIOSGA016933-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTTTTTTTATTTTTGCTGTAGGAACATTCCAATTGTAATGCTTGAAGATTTCGCACATGATCA
GCAAAATTTAATAGCTTGCTTGGAAGACAGATTCGTgctattagtttcctatggtgattctggt
acaaagggtgcccttacagatgagcatgttcttggatcagcaaagtgtcaggtgtggttttccc
ccattcct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTATTAGTTTCCTATGGTGATTCTGGTACAAAGGGTGCCCTTACAGATGAGCATGTTCTTGGA
TCAGCAAAGTGTCAGGTGTGGTTTTCCCCCATTCCTTAAGGATTGTATATGTACAGTAATATCT
TCAGCAGAAATTGTCTTTAGGATTTAACAATTGAATTCCTTCATTTCTATGTTTTGTTCAGGCC
TTAGCTGAGCTTTTACCTTCCTTAGCAAATGATGGCCACAGAGTTCTCATATTCAGCCAATGGA
CGACAATGCTTGATATCCTTGAATGGACACTGGAAGTAATAGGAGTTACTTATAGACGTCTTGA
TGGGGGGTTAGTTTTTTTTCAGCATTTATTTTTGGAATTAAAATGTTTCTCAATCCTAAGCGAT
GAAGTTCCTTCTGTTTCAGCACCCCAGTAACTGAAAGGCAGACTATAGTCGACACTTTCAATAA
CGACCGATCTATATTTGCATGTTTGCTTTCCACAAGAGCTGGAGGCCAGGGTCTGAATTTAATA
GGAGCTGATACAGTGATAATACATGACATGGATTTCAACCCCCAGATGGATCGGCAAGCTGAAG
ATCGCTGCCATCGCATTGGACAACAGAAACCTGTCACTATCTATAGGTAATATGTGCTATGTCT
AATTATGTTCATTTGGATATTTTATCGGTTACTTATGTTTTTTGTGATTCAGATTGTGAGCATA
TCACCATATTCATATCGACGTGGTGATGATAAATTCATAAATATTGAACTCTACAACATGGTAA
CAGTGATGATTTCATTTTCTTTCAGGCTAGTGACAAAGGGTTCGGTTGATGAAAACATATATGA
GATAGCAAGGAGAAAGTTAGTATTAGATGCTGCAATTCTCCAGTCCGGAGCAGAGTTAGAAGAT
AGCACTGATGTACCTGAGAAAACAATGGGAGAAATTTTGGCATCTCTTCTCCTGGTGTGAGGTT
CTTGTCATAGAATGCTTGAAGGTACATAATTTCTCCTGAGGATATGTCTGTAACTGTCAACCTT
ATTCATTCTTCATTTAAGCGAGACGCTTTTGGTTGGCCGTTCTAATATGCATAGCTCAATGGTG
CCTATTTTGCACTGGATTTTGATTTATCACTGTCTGCCTCATCTACTGGTGATTCTATGAATAA
GCTTCTGTCAACTGTGCTTCAGACTCATATTTTGTTTTGAATGTGATTCAGCATAGTGACATAC
TGTATAAGCTTAACATAGGTACAAATAGGTGGTAGAGAACTTTATTGTAGAAAATACTGAAACT
AGAAGATTCAGAAAAATAATTATACATCTGTACTGCTGAAATTTACAAGCTTGATATTAATGAA
ATGACTTTATAACTTGTAGGCCACATTATGTCGGATAATTGCATCACTCGTTACCTCACTTTTC
ATTTTCTGTTCTCTGGATGACGTCTCCACTATTTTGCTAACACTTCCTTTTCTAGTGTAGTTCT
CATCTCCTTATTTCTGTAAAAGGAACCTTAGTATATGCACTGCCATTTCTGCTGCATTGGTTGC
CATGCACCACACCTAATATAAGATTCTGCTGTGTTCTGTAGTGTAGATTACAGGTGATATTTTT
TTATTTCCTTTTTGCTCCTGCTAGCAGTGAGATGATTTTTCACTGTTTTGGCACCAGTGGACGA
CTGGCCAGCTTGTAGCTTCAGTATGTTATTTGATTAATTCTTTCCTAGTTGCTTGATGATACGC
TTGTGACTTGGGAGGTTCTGATTGGATTTCCGTCTAAGGCAAGATGGTATCCATTATTATATCG
GCTATTCATTTCTGACCTTACACCTGCCACCTGGATTAAGTTCATTTCTTCTTTTCCTATGAAG
AATTTTTCATTGAAGATGCTCCTTGCTTATTAATATCAAATTTCTTATTGAAGTGTGTTGTCGA
TGAATTGGTTTAAACCGCTACTCATATTATCTGTTTTCTGTCCTTTCTTCCCACTTAACTGAAT
ATTATGAATCTCTTGTAGATGTGTAGTTGCTGCCAAATTCTTTTCTGATATATTTCAACTGTAG
TAATAACCTGTTTACTAGATCTCACCAGTATTTGTTCGACATATTGTGCTGATTTGAAGAAATT
ATCCGTGCACCTATCTCCTTTCTGTACCTTACACTACCATGCACATTGTACCCAAGCAGGCACT
AGCTTGTGTACACCTGCGTCGTTCGCATCCACAGATCTATGGCTGTAAATGGGTACTCCACATT
GCCACGTATTCCTTATAACCTTGTCTTGGACGTAAGAAAATGTTTGCAGGATCTTATGGTTACA
CAACTTATACTACTGTTAGCTTCATTGCTTTAGTCGTGTTCTACAGTACAGCCTTGATATTTTG
CTGGCCATTACAAGTGTGCAACATATTCTGCTATGAATGTACCTTATCTCATTTGTTAGAGTCG
ATAGAATACGATATACTTTGGTAGCTATCCTGATGAGTTTCATGTGGTATTGTTCTTTGATAGC
ATGCATTTTATTTGCTGCTCCATGTCCCTCACAATGTAAACGTTTTGGTGTCACGGATAGGCCT
ATGTGGAGCAGGTGTTGATCAGTTTTAAGATTTTCATTTTTTTTTATTTTTGCTGTAGGAACAT
TCCAATTGTAATGCTTGAAGATTTCGCACATGATCAGCAAAATTTAATAGCTTGCTTGGAAGAC
AGATTCGT
Conservation Information
Conserved circRNAs osa_circ_024902
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021