Detail information of BGIOSGA016933_circ_g.4


General Information
CircRNA Name BGIOSGA016933_circ_g.4
ID in PlantcircBase osi_circ_014662
Alias Chr04:28978053_28979033(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 27218897-27219877  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA016933
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016933_circ_g.2 BGIOSGA016933_circ_g.3 BGIOSGA016933_circ_g.5 BGIOSGA016933_circ_g.6
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-CA
Number of exons covered BGIOSGA016933-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCAGAGTTAGAAGATAGCACTGATGTACCTGAGAAAACAATGGGAGAAATTTTGGCATCTCTTC
TCCTGGTGTGAGGTTCTTGTCATAGAATGCTTGAAGgctattagtttcctatggtgattctggt
acaaagggtgcccttacagatgagcatgttcttggatcagcaaagtgtcaggtgtggttttccc
ccattcct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTATTAGTTTCCTATGGTGATTCTGGTACAAAGGGTGCCCTTACAGATGAGCATGTTCTTGGA
TCAGCAAAGTGTCAGGTGTGGTTTTCCCCCATTCCTTAAGGATTGTATATGTACAGTAATATCT
TCAGCAGAAATTGTCTTTAGGATTTAACAATTGAATTCCTTCATTTCTATGTTTTGTTCAGGCC
TTAGCTGAGCTTTTACCTTCCTTAGCAAATGATGGCCACAGAGTTCTCATATTCAGCCAATGGA
CGACAATGCTTGATATCCTTGAATGGACACTGGAAGTAATAGGAGTTACTTATAGACGTCTTGA
TGGGGGGTTAGTTTTTTTTCAGCATTTATTTTTGGAATTAAAATGTTTCTCAATCCTAAGCGAT
GAAGTTCCTTCTGTTTCAGCACCCCAGTAACTGAAAGGCAGACTATAGTCGACACTTTCAATAA
CGACCGATCTATATTTGCATGTTTGCTTTCCACAAGAGCTGGAGGCCAGGGTCTGAATTTAATA
GGAGCTGATACAGTGATAATACATGACATGGATTTCAACCCCCAGATGGATCGGCAAGCTGAAG
ATCGCTGCCATCGCATTGGACAACAGAAACCTGTCACTATCTATAGGTAATATGTGCTATGTCT
AATTATGTTCATTTGGATATTTTATCGGTTACTTATGTTTTTTGTGATTCAGATTGTGAGCATA
TCACCATATTCATATCGACGTGGTGATGATAAATTCATAAATATTGAACTCTACAACATGGTAA
CAGTGATGATTTCATTTTCTTTCAGGCTAGTGACAAAGGGTTCGGTTGATGAAAACATATATGA
GATAGCAAGGAGAAAGTTAGTATTAGATGCTGCAATTCTCCAGTCCGGAGCAGAGTTAGAAGAT
AGCACTGATGTACCTGAGAAAACAATGGGAGAAATTTTGGCATCTCTTCTCCTGGTGTGAGGTT
CTTGTCATAGAATGCTTGAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021