Detail information of BGIOSGA016933_circ_g.2


General Information
CircRNA Name BGIOSGA016933_circ_g.2
ID in PlantcircBase osi_circ_014661
Alias Chr04:28977621_28980748(MH63RS2), Chr04:29020746_29023872(ZS97RS2), Chr04:28977621_28980748(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 27218465-27221592  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRI2, CIRI2
Parent gene BGIOSGA016933
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016933_circ_g.3 BGIOSGA016933_circ_g.4 BGIOSGA016933_circ_g.5 BGIOSGA016933_circ_g.6
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-CA
Number of exons covered BGIOSGA016933-TA:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTTTTTTTATTTTTGCTGTAGGAACATTCCAATTGTAATGCTTGAAGATTTCGCACATGATCA
GCAAAATTTAATAGCTTGCTTGGAAGACAGATTCGTgattgcgaaccatccattgcttataagg
cgcatttacagtgacaaagatgttgatcgaattgcaaagttactgtaccctaaaggtgcattcg
gttttgaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATTGCGAACCATCCATTGCTTATAAGGCGCATTTACAGTGACAAAGATGTTGATCGAATTGCA
AAGTTACTGTACCCTAAAGGTGCATTCGGTTTTGAATGTTCATTGGAAAGAGCAACCCAAGAAC
TTAGGAAGTACAATGATTTTGCTATCCACCAAGTATTGTTCATCCCTTTACTGTTCTACCTGAT
CAGTTTTAATCCACCTTATATTGTTTTTCTGACTGAATTATACCAGTGCTTGCCATCTTTCAGT
GTTGCATTGTTTGATCATAACTTTTATCCTGCTTATTGCTAGTAACTTTCTTTTTTCTTTGCAC
CAAATAGTATGGATGTGACATGTTTCTTTTTTGTTGTTGACGAACCTTTCCTGTGTCCAAAATT
TAGAATTTTTTTTCAATCCTATCTGACAATTAGTTTCTCACTTCTTCAGCTATTAGTTTCCTAT
GGTGATTCTGGTACAAAGGGTGCCCTTACAGATGAGCATGTTCTTGGATCAGCAAAGTGTCAGG
TGTGGTTTTCCCCCATTCCTTAAGGATTGTATATGTACAGTAATATCTTCAGCAGAAATTGTCT
TTAGGATTTAACAATTGAATTCCTTCATTTCTATGTTTTGTTCAGGCCTTAGCTGAGCTTTTAC
CTTCCTTAGCAAATGATGGCCACAGAGTTCTCATATTCAGCCAATGGACGACAATGCTTGATAT
CCTTGAATGGACACTGGAAGTAATAGGAGTTACTTATAGACGTCTTGATGGGGGGTTAGTTTTT
TTTCAGCATTTATTTTTGGAATTAAAATGTTTCTCAATCCTAAGCGATGAAGTTCCTTCTGTTT
CAGCACCCCAGTAACTGAAAGGCAGACTATAGTCGACACTTTCAATAACGACCGATCTATATTT
GCATGTTTGCTTTCCACAAGAGCTGGAGGCCAGGGTCTGAATTTAATAGGAGCTGATACAGTGA
TAATACATGACATGGATTTCAACCCCCAGATGGATCGGCAAGCTGAAGATCGCTGCCATCGCAT
TGGACAACAGAAACCTGTCACTATCTATAGGTAATATGTGCTATGTCTAATTATGTTCATTTGG
ATATTTTATCGGTTACTTATGTTTTTTGTGATTCAGATTGTGAGCATATCACCATATTCATATC
GACGTGGTGATGATAAATTCATAAATATTGAACTCTACAACATGGTAACAGTGATGATTTCATT
TTCTTTCAGGCTAGTGACAAAGGGTTCGGTTGATGAAAACATATATGAGATAGCAAGGAGAAAG
TTAGTATTAGATGCTGCAATTCTCCAGTCCGGAGCAGAGTTAGAAGATAGCACTGATGTACCTG
AGAAAACAATGGGAGAAATTTTGGCATCTCTTCTCCTGGTGTGAGGTTCTTGTCATAGAATGCT
TGAAGGTACATAATTTCTCCTGAGGATATGTCTGTAACTGTCAACCTTATTCATTCTTCATTTA
AGCGAGACGCTTTTGGTTGGCCGTTCTAATATGCATAGCTCAATGGTGCCTATTTTGCACTGGA
TTTTGATTTATCACTGTCTGCCTCATCTACTGGTGATTCTATGAATAAGCTTCTGTCAACTGTG
CTTCAGACTCATATTTTGTTTTGAATGTGATTCAGCATAGTGACATACTGTATAAGCTTAACAT
AGGTACAAATAGGTGGTAGAGAACTTTATTGTAGAAAATACTGAAACTAGAAGATTCAGAAAAA
TAATTATACATCTGTACTGCTGAAATTTACAAGCTTGATATTAATGAAATGACTTTATAACTTG
TAGGCCACATTATGTCGGATAATTGCATCACTCGTTACCTCACTTTTCATTTTCTGTTCTCTGG
ATGACGTCTCCACTATTTTGCTAACACTTCCTTTTCTAGTGTAGTTCTCATCTCCTTATTTCTG
TAAAAGGAACCTTAGTATATGCACTGCCATTTCTGCTGCATTGGTTGCCATGCACCACACCTAA
TATAAGATTCTGCTGTGTTCTGTAGTGTAGATTACAGGTGATATTTTTTTATTTCCTTTTTGCT
CCTGCTAGCAGTGAGATGATTTTTCACTGTTTTGGCACCAGTGGACGACTGGCCAGCTTGTAGC
TTCAGTATGTTATTTGATTAATTCTTTCCTAGTTGCTTGATGATACGCTTGTGACTTGGGAGGT
TCTGATTGGATTTCCGTCTAAGGCAAGATGGTATCCATTATTATATCGGCTATTCATTTCTGAC
CTTACACCTGCCACCTGGATTAAGTTCATTTCTTCTTTTCCTATGAAGAATTTTTCATTGAAGA
TGCTCCTTGCTTATTAATATCAAATTTCTTATTGAAGTGTGTTGTCGATGAATTGGTTTAAACC
GCTACTCATATTATCTGTTTTCTGTCCTTTCTTCCCACTTAACTGAATATTATGAATCTCTTGT
AGATGTGTAGTTGCTGCCAAATTCTTTTCTGATATATTTCAACTGTAGTAATAACCTGTTTACT
AGATCTCACCAGTATTTGTTCGACATATTGTGCTGATTTGAAGAAATTATCCGTGCACCTATCT
CCTTTCTGTACCTTACACTACCATGCACATTGTACCCAAGCAGGCACTAGCTTGTGTACACCTG
CGTCGTTCGCATCCACAGATCTATGGCTGTAAATGGGTACTCCACATTGCCACGTATTCCTTAT
AACCTTGTCTTGGACGTAAGAAAATGTTTGCAGGATCTTATGGTTACACAACTTATACTACTGT
TAGCTTCATTGCTTTAGTCGTGTTCTACAGTACAGCCTTGATATTTTGCTGGCCATTACAAGTG
TGCAACATATTCTGCTATGAATGTACCTTATCTCATTTGTTAGAGTCGATAGAATACGATATAC
TTTGGTAGCTATCCTGATGAGTTTCATGTGGTATTGTTCTTTGATAGCATGCATTTTATTTGCT
GCTCCATGTCCCTCACAATGTAAACGTTTTGGTGTCACGGATAGGCCTATGTGGAGCAGGTGTT
GATCAGTTTTAAGATTTTCATTTTTTTTTATTTTTGCTGTAGGAACATTCCAATTGTAATGCTT
GAAGATTTCGCACATGATCAGCAAAATTTAATAGCTTGCTTGGAAGACAGATTCGT
Conservation Information
Conserved circRNAs osa_circ_024899
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021