Detail information of Os04g0588700_circ_g.1


General Information
CircRNA Name Os04g0588700_circ_g.1
ID in PlantcircBase osa_circ_025018
Alias Os_ciR9528
Organism Oryza sativa
Position chr4: 29755412-29759482  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method find_circ
Parent gene Os04g0588700
Parent gene annotation ABC transporter-like domain containing protein. (Os04t0588700-01
)
Parent gene strand +
Alternative splicing Os04g0588700_circ_g.2 Os04g0588700_circ_g.3
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os04t0588700-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTCTTGTAGCTGTAACCGGCCTCCTCACATCAGAAAAATTGTTCAAGAGCATGATGCATTGCA
TCTTTCATGCTCCTATGTCTTTCTTTGACTCGACACctgggagcagcttgatccgtctgacctg
ccattttgccaagctacctgagaacaaaggtgcatacatactatcacactttaatgcgaactga
aagtatgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGGGAGCAGCTTGATCCGTCTGACCTGCCATTTTGCCAAGCTACCTGAGAACAAAGGTGCATA
CATACTATCACACTTTAATGCGAACTGAAAGTATGTATTTGCAATACAGGCATTAGGAATTTAG
ATAAGAGTATTTGCAGAAACCTGATGTTTATACATACAATCTCATAGATTCTCTTAACTCCTAA
GGTAGATGTTCTAGGACTCCTTACACTTCGCTGCGGTGTCCCACATATGGCGTCCTCCTTGATT
AGATTAAAACTGTACTGTATGTCTGCATCAGAATCATAGAATGTTCTTACGATGTTAGTAGTTC
TGTATAACCAGCATCCTCTGTTCAGTTGAGGTAATTCCCCTTCACCTTCCATCAAAATGACCGT
AGGTGTACACCTTGAAAAATCCCAGATAGCCAGACAGGTGAACAGTATGTTACAGAAATTAAGA
GCATGAAGAAGGCAATGGGGGTCTAGATAGGTCATGTTTTGTGGCTGTGTGCATTTCTTGCAGA
GGTCGGGAGTGGGCTCAATTAGAATGTATCATCTTGTTGTATTTGACTGAGTTTTAATAAAGCT
TCCATTATTGAGAAATGGGCAACATGGAAAAATAACATATTTCAGGCTTAAACTTGCGATGTGC
AACAACAGAAAAGAAGACCACAGCTTTGACGCAGTTTATTAAGTTTCATATAATAGAATACTTG
AGTTCTGAGGTTTTTGGGCCTGGTTTCCCCTCAAAAACTGGGCCAAGTCTCTTCTTCTTTAATG
AAAACAGGCTCTCCCTGTCCTCTTCTAAGGCTTTTCCTCAAAAAAAGAATACTTGAGTTCTTTA
TGACTAAGCAACTAAATAGTGTAGTTCACAAGTTTTACTTGGCATACGTACCATAAAATGAAAT
TAAAGGTATGGTTTTTGCAAAATGGCACACTTGTGTCAATTATCATTTGAACCAGAAGAAATAT
CAGATTTTTTTAATTCTCCTTTTGTACAAATACACGTTTGTTCATTGCAAAACAGGGATCCAAT
TCACCTGCGGCACACAAGAACCATTTCCAGATGCTTCAAAAGAAGAAAATGTGAAAAACAGGAG
GAAATCTTCTTATGGAGAGGCAACTATTTCACAACATTTCACTTTCTCTTGGATGAATGGTCTT
CTTGCTAAAGGTGCCAATAAGCCTTTGAATGAGGATGACATACCAGATGTTGGTGAGGAGGAAA
GTGCCCAACACATCTCCAGAATATTCAGTAATATCATTGTGAAAGGGAATTTTCCTCTGACAGT
TTCATCGATTTGTAAAGCAGCCTTCCTTCTCATTTGGAAGAAGGCGGCACTCAATGCAACCTTT
GGAGTCCTAAGTGTAGTCGCCTCCTTTGTGGGGGCATACTTAATCAAGGACTTCGTGGGCTATC
TAAGTGGAGATAATGGATTTGAAAGAGGCTACTCTCTTGTTCTTGTATTTGTAGGTGCGAAGGC
TATTGAAACTCTTGCTTACAGACAATGGTTCTTTGGAAGTCTACAGGTTTATTTGCGCCTAAGA
ACATCTCTGATATCTCAGGTATACCAAAAGGTCCTTTATTTATCAAGCCAGTCAAGGCAGAAAC
ATACCTCAGGGGAGATAATTAACTATGTGAGTGTTGACATCGAGAGGATTGTTAATGTTGCATG
GTATGTGAACATGGTCTTCATGATGCCTATACAGATTACACTAGCAACTTATATTCTTTGGAAA
AATCTTGGTCTGGGTTCTTTAGCTGGAATAGCAACAACAGCCATAATAATGCTTTGCAATATTC
CTTTTACAAGAATCCAGAAAAGATTGCACGCAGGAATTATGAAAGCAAAAGATGACAGAATGGA
CATGACATCTGAAGTTATAAGAAGCATGAAGATCTTAAAACTTCAAGCTTGGGATATCCAATAC
CTTAGGAAATTGGAATATTTGAGGAAAGGAGAACATTTGTGGTTGTGGGAATTTCTAAGACTAA
AAGCACTACTAGCATTTATGTTCTGGGGAGCACCCGCTGTCATATCAATCATGACATTTGCTTC
ATGCATTCTGATGGGAATCCCTCTAACAGCTGGAAGAGTGTTGTCCACACTAGCAACTGTGAAT
ATACTGAAGGAGCCTATCTTTAGTCTACCAGAATTGCTTACTGCCTTTGCACAGGGGAAGATCT
CAGCTGACAGAATAGTGTCATATCTCCAAGAAGAAGAAATAAGATCTGATGCAATTGAGGAAGT
AGCAATAGACGAAAATGAATTTTCTGCAGAGATTGATCAGGGAGCATTCAGTTGGAAAACTGAT
GCAAAAATCCCAACACTTCAAGATATACATGTAAAGATACACAAAGGGATGAAAGTGGCAGTAT
GTGGAGCTGTTGGGAGTGGAAAATCTAGCCTGTTGTCATGTGTACTTGGAGAGATGCCAAAAGT
GCAAGGAACGGTTAAGGTCTTTGGAACCAAAGCATATGTTCCACAGTCGTCATGGATACTTTCT
GGGACTATTAGAGAAAACATTCTCTTTGGGAGCCCATTTGAAACTGATAGGTATGAGCGGACAA
TTGAAGCATGTGCCTTGGTTAAAGACATCGGAGTTTTCTCGGATGGTGATATGACAGATATAGG
AGAACGGGGAACGACTATGAGTGGGGGACAAAAGCAACGGATTCAAATAGCAAGAGCAGTTTAC
AAGGATGCTGATGTCTACCTGTTTGATGATCCTTTCAGTGCTGTAGACCCTCAAACTGGGAGGC
ATCTATACAAGGTCCTTTTCCCCTTAAGAGCCAACAAAAGAAAATAACACCAGGGTCACAAAAA
TATAATGCTTTGATGGTTTCAAATTTTCCATAGTTAAAAGAAGTCATCATGTTCTCTAGGACAA
ACAATGGGCATCGTATATTTGAGATCTTGTGATTATTCAATAATCTTGTCCATATTATTATTGA
TATTTATTTCTCTCGCTAAAATAAATTGCTCATATCTATATTTTTACTGGCAAGGAGAAGCCCT
GTTACATAACCATTAACATTGGCTCTATACATTTTTTGCAGAAATGCCTGATGGGGGTCCTAAG
GGATAAAACTGTGTTATACGTCACGCACCAAGTTGAATTTCTAGTTGATGCAGACCTTATTATG
GTAAGCCCCTGAAAAAAAAACTAAAGACATGATTGTACTGAACATTAGGATAAATAATGATGAC
TGCTAAAAACATGCTGTGCATATGGGAATCCTTTTAGAGAATTTACAGCCCTTTGCAGGCTTGA
GGTGTAGAGGTATCTCCTAGTGTTAGTTTTGTATAACTTTCAGTAGCTACACCTATCAGTTCTC
ATGATCCACACTAGGAGATACTACTACCTCTCAATAACTCATAAGGATCCCAGAAAAGAAACTA
GTATGTTTAACTTGACTGGTTGAAGCAATATTGCAGGTGATGCAAAATGGAAGGATAGCACAAG
CAGGGAAATTTCAAGAACTCCAACAGAACATGGCTTTTGGAGTTATCTTTGGGGCTCACTTTTG
TGCCGTCGAACAAGTTTGTAACGCAAAAGGCACAAGCATATATTTGTCAAAGCATCATGCAGAA
TCAGAAAAGGTACCAAGCATCAATGAGTCCGATGCAGAAAAGGAAATCAGCAGCAAATGGCAAA
ACACAAATATGATAAATTGCAGACAAGAAGTATTTAGAGATAACACTGAAGAAGGGAAATTGCT
GCAGGGTGAAGAAAGAGAGAATGGATACATTAGCAAGCAAGTGTATTGGTCATACCTCACAGCT
GCTCGAGGTGGTCTTTTCATTCCTATGATAATTGCAGCACAATGCTTCTTTCAGATATTTGAAG
TGGGAAGCAACTATTGGATGGCATCAGCTTGCCATCCACGAACTGGAAGCAAATCAAAAATGGA
ATCCACCCAGTTCATGGTATATGTATTTATATCAGTTGGCAGCGCCTTGTGTATCTTGATTCGA
GCAGTTCTTGTAGCTGTAACCGGCCTCCTCACATCAGAAAAATTGTTCAAGAGCATGATGCATT
GCATCTTTCATGCTCCTATGTCTTTCTTTGACTCGACAC
Conservation Information
Conserved circRNAs osi_circ_014715
PMCS 0.100750113
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015