Detail information of Os04g0588700_circ_g.3


General Information
CircRNA Name Os04g0588700_circ_g.3
ID in PlantcircBase osa_circ_025020
Alias NA
Organism Oryza sativa
Position chr4: 29758548-29758779  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os04g0588700
Parent gene annotation ABC transporter-like domain containing protein. (Os04t0588700-01
)
Parent gene strand +
Alternative splicing Os04g0588700_circ_g.1 Os04g0588700_circ_g.2
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   AT-TG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGAGGTATCTCCTAGTGTTAGTTTTGTATAACTTTCAGTAGCTACACCTATCAGTTCTCATGA
TCCACACTAGGAGATACTACTACCTCTCAATAACTCgtaagcccctgaaaaaaaaactaaagac
atgattgtactgaacattaggataaataatgatgactgctaaaaacatgctgtgcatatgggaa
tcctttta
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 232
Transcript exons: 29758548-29758779
GTAAGCCCCTGAAAAAAAAACTAAAGACATGATTGTACTGAACATTAGGATAAATAATGATGAC
TGCTAAAAACATGCTGTGCATATGGGAATCCTTTTAGAGAATTTACAGCCCTTTGCAGGCTTGA
GGTGTAGAGGTATCTCCTAGTGTTAGTTTTGTATAACTTTCAGTAGCTACACCTATCAGTTCTC
ATGATCCACACTAGGAGATACTACTACCTCTCAATAACTC

Genomic sequence GTAAGCCCCTGAAAAAAAAACTAAAGACATGATTGTACTGAACATTAGGATAAATAATGATGAC
TGCTAAAAACATGCTGTGCATATGGGAATCCTTTTAGAGAATTTACAGCCCTTTGCAGGCTTGA
GGTGTAGAGGTATCTCCTAGTGTTAGTTTTGTATAACTTTCAGTAGCTACACCTATCAGTTCTC
ATGATCCACACTAGGAGATACTACTACCTCTCAATAACTC
Conservation Information
Conserved circRNAs NA
PMCS 0.208936782
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017