Detail information of BGIOSGA017009_circ_g.1


General Information
CircRNA Name BGIOSGA017009_circ_g.1
ID in PlantcircBase osi_circ_014715
Alias Chr04:30473984_30478055(MH63RS2), Chr04:30522600_30526671(ZS97RS2), Chr04:30473984_30478055(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 28546337-28550408  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRI2, CIRI2, CIRI2
Parent gene BGIOSGA017009
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-TA
Number of exons covered BGIOSGA017009-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTCTTGTAGCTGTAACCGGCCTCCTCACATCAGAAAAATTGTTCAAGAGCATGATGCATTGCA
TCTTTCATGCTCCTATGTCTTTCTTTGACTCGACACcctgggagcagcttgatccgtctgacct
gccattttgccaagctacctgagaacaaaggtgcatacatactatcacactttaatgcgaactg
aaagtatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGGGAGCAGCTTGATCCGTCTGACCTGCCATTTTGCCAAGCTACCTGAGAACAAAGGTGCAT
ACATACTATCACACTTTAATGCGAACTGAAAGTATGTATTTGCAATACAGGCATTAGGAATTTA
GATAAGAGTATTTGCAGAAACCTGATGTTTATACATACAATCTCATAGATTCTCTTAACTCCTA
AGGTAGATGTTCTAGGACTCCTTACACTTCGCTGCGGTGTCCCACATATGGCGTCCTCCTTGAT
TAGATTAAAACTGTACTGTATGTCTGCATCAGAATCATAGAATGTTCTTACGATGTTAGTAGTT
CTGTATAACCAGCATCCTCTGTTCAGTTGAGGTAATTCCCCTTCACCTTCCATCAAAATGACCG
TAGGTGTACACCTTGAAAAATCCCAGATAGCCAGACAGGTGAACAGTATGTTACAGAAATTAAG
AGCATGAAGAAGGCAATGGGGGTCTAGATAGGTCATGTTTTGTGGCTGTGTGCATTTCTTGCAG
AGGTCGGGAGTGGGCTCAATTAGAATGTATCATCTTGTTGTATTTGACTGAGTTTTAATAAAGC
TTCCATTATTGAGAAATGGGCAACATGGAAAAATAACATATTTCAGGCTTAAACTTGCGATGTG
CAACAACAGAAAAGAAGACCACAGCTTTGACGCAGTTTATTAAGTTTCATATAATAGAATACTT
GAGTTCTGAGGTTTTTGGGCCTGGTTTCCCCTCAAAAATTGGGCCAAGTCTCTTCTTCTTTAAT
GAAAACAGGCTCTCCCTGTCCTCTTCTAAGGCTTTTCCTCAAAAAAAGAATACTTGAGTTCTTT
ATGACTAAGCAACTAAATAGTGTAGTTCACAAGTTTTACTTGGCATACGTACCATAAAATGAAA
TTAAAGGTATGGTTTTTGCAAAATGGCACACTTGTGTCAATTATCATTTGAACCAGAAGAAATA
TCAGATTTTTTTAATTCTCCTTTTGTACAAATACACGTTTGTTCATTGCAAAACAGGGATCCAA
TTCACCTGCGGCACACAAGAACCATTTCCAGATGCTTCAAAAGAAGAAAATGTGAAAAACAGGA
GGAAATCTTCTTATGGAGAGGCAACTATTTCACAACATTTCACTTTCTCTTGGATGAATGGTCT
TCTTGCTAAAGGTGCCAATAAGCCTTTGAATGAGGATGACATACCAGATGTTGGTGAGGAGGAA
AGTGCCCAACACATCTCCAGAATATTCAGTAATATCATTGTGAAAGGGAATTTTCCTCTGACAG
TTTCATCGATTTGTAAAGCAGCCTTCCTTCTCATTTGGAAGAAGGCGGCACTCAATGCAACCTT
TGGAGTCCTAAGTGTAGTCGCCTCCTTTGTGGGGGCATACTTAATCAAGGACTTCGTGGGCTAT
CTAAGTGGAAATAATGGATTTGAAAGAGGCTACTCTCTTGTTCTTGTATTTGTAGGTGCGAAGG
CTATTGAAACTCTTGCTTACAGACAATGGTTCTTTGGAAGTCTACAGGTTTATTTGCGCCTAAG
AACATCTCTGATATCTCAGGTATACCAAAAGGTCCTTTATTTATCAAGCCAGTCAAGGCAGAAA
CATACCTCAGGGGAGATAATTAACTATGTGAGTGTTGACATCGAGAGGATTGTTAATGTTGCAT
GGTATGTGAACATGGTCTTCATGATGCCTATACAGATTACACTAGCAACTTATATTCTTTGGAA
AAATCTTGGTCTGGGTTCTTTAGCTGGAATAGCAACAACAGCCATAATAATGCTTTGCAATATT
CCTTTTACAAGAATCCAGAAAAGATTGCACGCAGGAATTATGAAAGCAAAAGATGACAGAATGG
ACATGACATCTGAAGTTATAAGAAGCATGAAGATCTTAAAACTTCAAGCTTGGGATATCCAATA
CCTTAGGAAATTGGAATATTTGAGGAAAGGAGAACATTTGTGGTTGTGGGAATTTCTAAGACTA
AAAGCACTACTAGCATTTATGTTCTGGGGAGCACCCGCTGTCATATCAATCATGACATTTGCTT
CATGCATTCTGATGGGAATCCCTCTAACAGCTGGAAGAGTGTTGTCCACACTAGCAACTGTGAA
TATACTGAAGGAGCCTATCTTTAGTCTACCAGAATTGCTTACTGCCTTTGCACAGGGGAAGGTC
TCAGCTGACAGAATAGTGTCATATCTCCAAGAAGAAGAAATAAGATCTGATGCAATTGAGGAAG
TAGCAATAGACGAAAATGAATTTTCTGCAGAGATTGATCAGGGAGCATTCAGTTGGAAAACTGA
TGCAAAAATCCCAACACTTCAAGATATACATGTAAAGATACACAAAGGGATGAAAGTGGCAGTA
TGTGGAGCTGTTGGGAGTGGAAAATCTAGCCTGTTGTCATGTGTACTTGGAGAGATGCCAAAAG
TGCAAGGAACGGTTAAGGTCTTTGGAACCAAAGCATATGTTCCACAGTCGTCATGGATACTTTC
TGGGACTATTAGAGAAAACATTCTCTTTGGGAGCCCATTTGAAACTGATAGGTATGAGCGGACA
ATTGAAGCATGTGCCTTGGTTAAAGACATCGGAGTTTTCTCGGATGGTGATATGACAGATATAG
GAGAACGGGGAACGACTATGAGTGGGGGACAAAAGCAACGGATTCAAATAGCAAGAGCAGTTTA
CAAGGATGCTGATGTCTACCTGCTTGATGATCCTTTCAGTGCTGTAGACCCTCAAACTGGGAGG
CATCTATACAAGGTCCTTTTCCCCTTAAGAGCCAACAAAAGAAAATAACACCAGGGTCACAAAA
ATATAATGCTTTGATGGTTTCAAATTTTCCATAGTTAAAAGAAGTCATCATGTTCTCTAGGACA
AACAATGGGCATCGTATATTTGAGATCTTGTGATTATTCAATAATCTTGTCCATATTATTATTG
ATATTTATTTCTCTCGCTAAAATAAATTGCTCATATCTATATTTTTACTGGCAAGGAGAAGCCC
TGTTACATAACCATTAACATTGGCTCTATACATTTTTTGCAGAAATGCCTGATGGGGGTCCTAA
GGGATAAAACTGTGTTATACGTCACGCACCAAGTTGAATTTCTAGTTGATGCAGACCTTATTAT
GGTAAGCCCCCGAAAAAAAAACTAAAGACATGATTGTACTGAACATTAGGATAAATAATGATGA
CTGCTAAAAACATGCTGTGCATATGGGAATCCTTTTAGAGAATTTACAGCCCTTTGCAGGCTTG
AGGTGTAGAGGTATCTCCTAGTGTTAGTTTTGTATAACTTTCAGTAGCTACACCTATCAGTTCT
CATGATCCACACTAGGAGATACTACTACCTCTCAATAACTCATAAGGATCCCAGAAAAGAAACT
AGTATGTTTAACTTGACTGGTTGAAGCAATATTGCAGGTGATGCAAAATGGAAGGATAGCACAA
GCAGGGAAATTTCAAGAACTCCAACAGAACATGGCTTTTGGAGTTATCTTTGGGGCTCACTTTT
GTGCCGTCGAACAAGTTTGTAACGCAAAAGGCACAAGCATATATTTGTCAAAGCATCATGCAGA
ATCAGAAAAGGTACCAAGCATCAATGAGTCCGATGCAGAAAAGGAAATCAGCAGCAAATGGCAA
AACACAAATATGATAAATTGCAGACAAGAAGTATTTAGAGATAACACTGAAGAAGGGAAATTGC
TGCAGGGTGAAGAAAGAGAGAATGGATACATTAGCAAGCAAGTGTATTGGTCATACCTCACAGC
TGCTCGAGGTGGTCTTTTCATTCCTATGATAATTGCAGCACAATGCTTCTTTCAGATATTTGAA
GTGGGAAGCAACTATTGGATGGCATCAGCTTGCCATCCACGAACTGGAAGCAAATCAAAAATGG
AATCCACCCAATTCATGGTATATGTATTTATATCAGTTGGCAGCGCCTTGTGTATCTTGATTCG
AGCAGTTCTTGTAGCTGTAACCGGCCTCCTCACATCAGAAAAATTGTTCAAGAGCATGATGCAT
TGCATCTTTCATGCTCCTATGTCTTTCTTTGACTCGACAC
Conservation Information
Conserved circRNAs osa_circ_025018
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021