Detail information of BGIOSGA024057_circ_g.1


General Information
CircRNA Name BGIOSGA024057_circ_g.1
ID in PlantcircBase osi_circ_017232
Alias Chr07:23462845_23467336(ZS97RS2), Chr07:23324869_23329365(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr7: 20984483-20988975  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2, CIRI2
Parent gene BGIOSGA024057
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA024057_circ_igg.1 BGIOSGA024057_circ_ag.1 BGIOSGA024057_circ_igg.2 BGIOSGA024057_circ_g.3 BGIOSGA024057_circ_g.4 BGIOSGA024057_circ_igg.5 BGIOSGA024057_circ_ig.1 BGIOSGA024057_circ_ig.2 BGIOSGA024057_circ_ig.3 BGIOSGA024056_circ_g.1 BGIOSGA024056_circ_igg.1 BGIOSGA024056_circ_g.2 BGIOSGA024056_circ_g.3 BGIOSGA024056_circ_g.4 BGIOSGA024056_circ_ig.1 BGIOSGA024056_circ_ig.2 BGIOSGA024056_circ_ig.3 BGIOSGA024056_circ_ig.4 BGIOSGA024056_circ_ig.5
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA024057-TA:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACTCACCATAGCCTACATCTGTGAGCTGTATAACAACATTGAAGAATGAAAACTCATAACTCC
AGTCACCTTCCCATGCATACAAACTCATAGCCCATCccaaaatcattcaaataatccattatca
acctcgtgaacatatcagtaagaactgtcgattcaggagagctattggacagtggacagtggaa
atccatct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCAAAATCATTCAAATAATCCATTATCAACCTCGTGAACATATCAGTAAGAACTGTCGATTCAG
GAGAGCTATTGGACAGTGGACAGTGGAAATCCATCTTGACGTAGGCCTTGGGTGTGAAGAACAT
TGTATCAGGCTTATACCATACTCTTGAAAACATTGTTTTCCTAAGCATACAAGGAAAACTTCCC
TGGATAAACCGAAAATATCAATAAAGTTTCACAAAATAAAATTATGAGCTTTTTTTTTAATAAA
AAATACCTTTTCCTCAACATTTTTCAATGAAAGATCACTTGGAATGAAGATATTAGGTTTTGGA
ATGTGCAAATCTTCCATGGGAGCCATATTTACCCATTTCTGTACAAATTATGTTACAAATGTGT
ACAATTCCAAATATATTAAATTGGAGAATATGATAGGAACAGTAACATCCAAATGTACACCTGT
ATGATGGAAGGAGTGACTGCTTCAACTGAATATGATGTACCATACCAAGGCTCTGTTAAGTTTG
TCTGCCCTTCAAACTTTTTTGATTCCCAGAATATTCTGAAGGAGATGAAGAAGATAACCCAGAA
GTATTAACACCCGTAAGTAAAAGTCACAATGAAAATAAAATCTAAACAAACAGATCAAGTGTGT
GAAAGGAAAAAATAAAGCAAATGGCCATAAGAGGATCAACGATGAGTGAGGAGCCTGTTGCTGC
TTTTTGGAAGTTAACAATAAAAAAAATGCAAAGGGACAAGTAATGAAATTTCTTCCGCTTTCTC
TGAGAAAAAAGGCTCAAATTTATGAAAAGTAGTGAAAGTTCTCTTGGCTGTGCCATCCTTCTAG
AAGAGCACTATAGTGTTTTATAATTGATTAGGCCAAGAGGAGTGTGAAGCGACAGCTAAATGCA
AAGACCGATCATTTTCCAAACTACATGCAGTAGTTGAAGAGCCACAATAATAAGCATATGCATA
CATTATACTGTTATTGCTGAAATGAACAACCAACTCAAATTGGCTAGTCCCCAATTCTGTATGA
TAACATTAAATGCATGAGATTACTGTTGTGAATAGAATACACATTGTTGTATCTTTGCAGTCTC
ATACTGATCCGAAATTTTCCATTCGAAATTGTGGGAAACAAGATGTGCTGGACGTGCTCCTGAA
AAATCCTAGGAATCATGTCTAACCTAAGTGTACGGGAAGAAGCATATGAAGATTTTACAATGTG
GTACATGAACCATTCAAGGCATCAAAGATATGTAGCACAAATGAATTAATATAGATATGAGTTT
CCTAAGAAAGTAACTTTTGAAATACTCCAAAAAAGAGAGTATAATACATAAAATATAACTTTTC
AACAAACATGTGCTGAATATTAAAACATAAAAAACTATGACTAAACCTTAAAACAGAACAGGAA
AACCCAACAAGGCCATATGGCCTGGATGTACTCAAAACCTACCTAGCATTATCTGGAGTCAAGT
CATTTAATATATTCTGAATAGCATCTGGAGAAAACTTTGATGGCACAGATGATGCAATCAGCCA
ATCTTCCGGCGGAAAGATCTATAATAGAGAGAGATCATGAGATGGTGATACCGAGCAGAATTAA
TTTGCAATTTATGAACAAACATTTTGGCATAATTTATTAGGAGGAACTGATCATTTCATTGTTC
AATGAAATATCATGAGCTGGACTTCTTGTTAATTTCATTTTGTGTAACGAAGCAAAGTAGCCTA
CAAACATAAGTTAAGAAAAGCTAAACAGTTTTTAGATATGCCACTCCACTTCCTCCCAGTCATA
TGCATGTGAATCTATGGGGAATGCAGATCCGCTCATGTAGAAAGCTTCAATTTTGTGAATTTGG
CGATATTCTGTTCAAATTTGACTAAAATTTGTTCAAAATTTTGGTATATCAGCACCCTCCAATA
GAAACGTCCAAACCTAAAGATTAAACCCTGGGGGGGGGGGGTTGCATATGCAAAAATTTCAGTC
TTTTGGGCCTCTGAAAACTCGGATATTTTGGTCAAACTACAACAGGAAGCATGAAAGGATCATA
ACCTACACAGAAGCCTAGAGCCTCATTAGTGGAACTATGCCCCACTGCATCCTTGCTGACAGGA
TCACGTTTTCTCTCAGGGAAGTGTTATGGTAGATGTGACTATCACCTCCAAATTTATCGATATC
ATTCACTCATAAATTAAGAGGCAACCCATATAATATGTCACATTTAGTACACAAGCCCAGCAAA
AAACATTTAGTACACAAATACATTGTAATATATCTAATACTCTCACACCCTTCTTGAAATTTGT
GTGGAGGTTGCCTCTTGATTTAGGGGTAGCTCATCATCTCTCTCCTCACTTATCTCCACCATCT
CATCACTTAATCCAATGTGGCACTCTTAGGGGCAGCATATGGAGCATTATAGTACTTGCCCTCA
GCGACTTCTCCCTCCTCACCGTGATCCAACTTACCGCTAGTCGCTAGAGAGTACAAGTATCTAA
TGGCTATGACTAGAGATTGCCAAGCTGATCCAGGCATTACCACATTGGTCTCTTACCCCTAGAA
GCCACATTAATCACCTTGACACATAAGACAGTCGTGCAACATGGAGTCAGTGACAAATTGCAGA
AAGAAGGGAGTTATCTGGTGGCATATAGTTCATATTCTCACTTCATTTGTGAGGGATCCCACCT
AATCACATCCCTATGAATTCAACCGAGTCTTATCCAACAACTCATAGGAGTATCAAGTTACAAG
GTTTTAAAGTAGCACAGCAATATAGTTTTGCACTAGATTCTCTCATACAAACATGTCACTGACA
AAATATAATAATAAGGTGCAGATTGATAGTAGAATTAATGACTGGTCATTCTTGACTTTTGCAT
GAGCACTTTCATGCCTTATCAAAAGTCACATCTGTCTAATCAGAAAATAGTTAGGTAGTAAGAT
TTTAAAAAGTCACTTTCTTTTATAAGCAAAGAGAAGTCTGCTTTCTGCCCTCGATTCAAACTTT
TATGAGAAACAGAGATGGAATACTGTTTCTCGTAAAAAAAAAAGATGGAATACTGTGATACCAC
CACCTATCAGGCCCGACGAGCGGTCCACTGTATAGGAAAATGGGCAACAATGGGACTCCTAACT
CTTTCTTGAACATGCAGGAACAGTCAATTGCAATTAAAACAGATGCTATTATTGCTAACTTCCT
TTTAAAATGATGACAAGACATGATAAAGATTATTAGTTGGCAATTATGGACATGCAATACAGAT
GCCCAAAGCAATGACTAAAATATACCTGCATGTTTGAGGAAATATTGACAACATAATGGATAGG
AGGACTCTTGTCTCGGTAGTGGAATCCCATCTCAGAAATAGCTACAAGCTTGACAATCAAAACA
GAGTGAGGTAGTTAGCTGTGTGCAATGCTAAATGGACTTCATGTGCATCATTACAATTTACAAT
GTCGCAAAAACACATAGACACTGTCATTATCGTTCACCAGTTAGACAATTATACAAATTCCAAG
CATTACTATAGTAGTTGGACAAAATAGAATTTGAAGGAAGCACGCAAAAACAATGTGACCCTTT
GACAAGCATTACTGTAGTAGTTGGACAAAATAGACCCTTTGAAGGAACCTAATGCATGCAGCGT
ACACAAAAACAATGTGAGCAACTTGATGATATGGTCACATACTCATGTTTCATGATTCATCTTG
AAAAGGTAAAGTATAATTAAATTTAAATATTAAATAGTAGCTCCCTAAAATGCCATTTATAGAG
GGATATTGGGTGATAAGAAAAGGTACTGGTCAAATTACGACAAATTAGACCAAAGATCTTATGT
ACAATCCTGACCAAAACAATAATCCAATTTAATGACTTCATTAATGGCCTGATTGTTTAAATTT
CGAAGTAGCGGTATCAGCCCAAGAAAAATTTGCAAAGCTTAAACGGATGTCACGTACAGCTTAC
AGTTGATTTTGGTCATTATAAAAAAAATATATTCCCAAAAGGTACACAAATCCAAAACCAAAAT
TCACCTCATCAAAAATCCACTGACGAGTTCCAGAGGTCTGGAGCAATGCTATGTATCGGAATAA
CAGTCCAATAATGTCCTCCATGTGCTCTATCATCAATGATATGAAATAGGTAAATATTATATAC
ACTGTAAATCTTCAGTACTTAAAAGTAAAATTTGATCTTCCATCAAAAAATAGTAAAGTTTGAT
CATATACTATCCACTTAGATTGAAATTAAGGATTTACCCTCCTGACTCTCATGTGAGTGACCTT
GATTACCCCACGTCTTTTTTTTATGCAAGAGATTACCCCACATGTCATTGGCACAGGAGGGTAA
ATCCTCAAAAAATTGTTGTTAAAAAGGCCCTTCTTGAATGAAACTCACCATAGCCTACATCTGT
GAGCTGTATAACAACATTGAAGAATGAAAACTCATAACTCCAGTCACCTTCCCATGCATACAAA
CTCATAGCCCATC
Conservation Information
Conserved circRNAs osa_circ_034406
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR2871a-3p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021