Detail information of BGIOSGA014328_circ_g.7


General Information
CircRNA Name BGIOSGA014328_circ_g.7
ID in PlantcircBase osi_circ_005739
Alias 4:30519285|30524126
Organism Oryza sativa ssp. indica
Position chr4: 30519285-30524126  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA014328
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014328_circ_g.8 BGIOSGA014328_circ_g.9 BGIOSGA014328_circ_igg.1 BGIOSGA014328_circ_g.2 BGIOSGA014328_circ_g.3 BGIOSGA014328_circ_g.4 BGIOSGA014328_circ_g.5 BGIOSGA014328_circ_g.6 BGIOSGA014328_circ_igg.7 BGIOSGA014328_circ_g.8 BGIOSGA014328_circ_g.9 BGIOSGA014328_circ_g.10 BGIOSGA014328_circ_g.11 BGIOSGA014328_circ_g.12 BGIOSGA014328_circ_igg.13 BGIOSGA014328_circ_igg.14 BGIOSGA014328_circ_igg.15 BGIOSGA014328_circ_igg.16
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA014328-TA:12
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCATGCTAAACAAGCAACACCTACCAATGTTGACCTCAACCTGAAACCCGTTCGCATGACATT
CTGAAAGTACTGTGCTTCAGAAAGAACACCCAGTGAcgtgaaaggacctttgcacttataactc
cagtttccctttcttcttgtttaatcagaacagatttcccctgttttgttttattagaagtgtc
ctgactct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGTGAAAGGACCTTTGCACTTATAACTCCAGTTTCCCTTTCTTCTTGTTTAATCAGAACAGATT
TCCCCTGTTTTGTTTTATTAGAAGTGTCCTGACTCTTCTGCATATCACCATCAGCTATTACACT
GCCCCCATTTTCAGGGTGTTTTATGTCATCCTGTCTTTTGCTTTCGTCCTGTTTCTCTTCCATC
TGTTCTTCCATCTTTCCAGCATTTTCCATGAGCTTCTTAAAGAGTTCCCCAGAGTTGCTAAGTT
CATCAAAGGTACCTTCTTCTTTAATTACACCATCATGGACTACCAGTATTTTATCCACATATGG
TAGAAAATGCAGCTGATTGGTAACAAGAACCCTAGTTTTGTGCTGTAGCTCTTCTTTAATACAT
TTGTCAAATACCTGCATAAGCATGTGATAATAGGGCATCAGTAATTAAGATTATTTAGTTGAAC
TGAAATATTTTCATACAGAAGAAAATCTTTGTTTGGATCACATAACAATTTGTCAGGATCTAAA
ATCTGTTTAACAAAATCTAGTTTTGGTAAGAGGGATCCAAACAGCCTCCAAGGTACATCACTTG
TAGCAGGCTACCAAAGCACAGCATATAGGATGATTTGGCATATAATTATTCACAACATTAGTTC
GGTCACAACAAACAGATTTAAGTATCTACCGTGACAAATGGTGTACCATATCTTATCGACGCAA
TTACTCTATAACAACCAGAAAGTGTGCCTATCTGCAGTAAACGGGCATAAGAAAAAAATGCATA
GCAATGTGATGTTCATAACAGAAACATGGCTGACACATGCCAAACCAATGGCATAGAACCTCAT
GTTTTCATGTCCCAGGGAAGTAAAACAGACACAAGGGAATCTCAGTAAAAAGGAATTTCGACAA
AAAAGATGCTGAAATCCACAAAACATTGACACCATTACCAACTGCCACTGGCAGATTTGATAAT
GCGGGGGAGACTGTAAAATTGAAAGCATGAACCGCAGTGGTAGCAAGATGAATGCACCTGTCGA
CCAACATGGGCATCTAATGCACTCAGTGGATCATCAAATATGTAGACATCTGAATCAGAATAAA
CAGCTCTTGCCATTGAGACTCTCTGTTTTTGTCCCCCACTAATGTTAACTCCTCTTTCTCCAAT
CTCTGTTAGGTCACCACCCTGACAACAAGCATAAGAAGATATATTTTCTTGTCAATTTGCAGGT
ACAAGAATATAAAGCGCAAAACCAAGATAGAAAAAGGTATTGGCAACATAATTTCAACATGACA
AATGAAAAAAAAAAAACACTCCCCAGCAAGTTATCTATCAAATGAAAGCTCGAGTGTCAAAAAT
TTCCAGAACGATCTCTGAAGACTGAAATAGTTAGAACTTACTGGGAGTAAGTCAAGGTCATGCC
GTAATGAAGTGACATCTATTGCTTTCTCGTAGCGTGGAGGTTGGAAGGGAGACCCAAACAATAT
ATTGTCCCGGACCTGCAGAGATGATAACATTATATCTGTAGAAGCCATAAAAGGTTCAATATAA
CAATCAACATAAATGGAGATATTGTGTCTCACAGTTGCATTGAAGATCCATGAAACTTGAGGAA
CATAAGCCACTGTTCCACGAAGGACCACCGATGTATTCGATCCTGACACTGGTGGTATTTCACC
AAGCATTGCAGAAATAAGAGAAGTCTTCCCCTCCCCAGTGCTTCCTACTATTGCAACCAAACTG
CCCATAGGTACATCCAGATTGACGTTTGATAATGTTGGTCTCTCAGCCTGCCAAAATTTGAAAA
ATTAGTTTTTGGAGCAACATCATAAGATTAGAGGAAACATGCAGTGTTAACAACTGTATAAAAT
TATGTGACAAAAATGGAAACCAATAAGAGCTGGTCAGAATAGTATTGTGAAGCTTACTACCAAA
TCATCAATTCATTATGAACTACGGAGACATCTGTAATAGACATCTTTCTATGGATCGACCTCAC
TACCTCAGTAACTAGATGCTCTCTTTTGCACTGACCTTGCCATTCATGAAGCATGCTAGTCTAT
CAATACTCTAATTCAGTATTTATTTGCCCAAACTTTTGTTTCTTTTCAGTACTCCAGACAACAG
AACAATAATATATGTGTTATATTATAATATCAATGAATGATGAGAGTTGAATGTGTGATAGTCA
ACATAGATATATTTAGATACCAGGCAAATATCTGAAACATGAAATTACCTGCGATTCCCATGAA
AAATATCCATTCTTAATAGAAATTGCTGGAAGCTCAGGATCAAGAGGTGGATTGGGCAGAAGTA
ATCTCTCTTCAGCCAAGAGGAGATCTTCCAGACGTTTCAATGACACTTTACAATTAACCACCTG
TCAAATTTAAAAGGAAAAAAAATAGTAAGGTGACTGTGAGTACTAACAAAAGAGTCGTTGAACA
AGAAAAGCAGAGAACTATCTCAAGCCAGCATTGGACTGTGACCAAAATTGTAAAAACCATTGTA
CTAATTTTCTCTGCCAAAGACAGATGAAAATTAACTGGTACAAGAATGATTATCAATCCAAACA
TATAAGTTCAGAAAATGATATACTTCTTAACTTGTACAGAAAGTGGGAAACTTAACAAGACATA
ATTTACAGCTTTTTGCACACCTGAGTTATCAGATTTGGCAGCATAAAAAGTGGAAATCTTAAGA
CAGCAAACAGTGAAAGTGATGTGAACGCCTTTGCTGGTGTCAAGTCACCTCCCAGCAGAGAGTA
TACACCAAATGAAACCACAGTGACAATAACGGGGATACTGTTTAGGATGAAGCTATTCAGCTGC
AGCAGACAAGGAAAAATACAAAAGATAATAGTGAGCCGACAATAAGGGATGCAACAACTCATTC
TCATATCTATTTTAAGTTTGAGTAACTAAGTACATTATTGTAAACAAACTTTATAGGACCAGGA
AGCACCAGTACAATCGATACTATAGCATGCAACTCCAAAACTTATTGTGTAATAAGGAGAGTTC
ATGGATGCACGATTAAAAAAGAGATCATATATAGCAGAATGAAATTGACACAAGTGAAAGATAA
CTTAAATACAAAATGGACATACCGCAGCAAGCAATTGAGCGCTGCGGAACCATGAAATTTCATC
ATCACGGATGTCCTGCACTTTTGACTGGAAACTTTGCTCCCAAGCATAACATCTAACCAAGAAA
ATGTTTGGAACAGTTTATACCAAAATTTTAGTACTACTTCTAGTAAAAACACAAGTAAATGTAA
AGCATACTTGACCGTATCCATTGCAGCTAATATTTCATTCATTAGACTGATTCTCCTGTCAGTC
CTTTGCAACCCTTCCTTGGTAAGTTTTTGCATTTTGCTTATGATAACAGTCTGGTAAATTAAAT
AAAGAAAATGTTAACAGTCAGATCTATGTTGAAAGTAGCAAAAGTTTGCTTAAAAGTAAAATCG
TTATTTGAAATGCATATATCATTCATAAAAATAGCATAATCTGAAAATCAGCAACTGTTAAGTG
CCCTGGCAATTTGCATTATAAGCTTCAAAAGAGAAAGCATGAGCAATATGGATTAGCCAAATAT
TAGGGATTTAAGCATTGACTTGATCAACTCCAATTTATGGACAACATCAAAGAATTTCTTACGG
GGTATGGCAGAAAACTAAGCAGACGTACAAACAGTACTACAATACAACCTCAGGATAGATAACA
GGAAGTAGAATCAACAACTAAATGATGGCATGAAAGACTCTAATGTGAACTCTAGGCTCCATAT
AAGAATCGATATATCAGTACAATCTTTCTGCACATTCCCTAAAAAGAATCAAAATATAAAAAAC
ACAAAGTAGATATTGGTAATGTAGGGACCAGATAGAAAGTTAAAAATGCAACATAAGACCTTCC
ATAATTGAATGTCTAAAGAGAAATCTACCTGAATTGGGAACAAAAGAACCAACATGGCTGCACC
GACCAATGCAGCAGGGCCTAGTTGTGCGTATAGAAGGACCATGGCAATAACAATGCGGAAAGGA
GCAGACCATAGACTGTGAAGTTGCTGGCACACTTGCTGCAAAAGTAAAAAAAGTACAAACCAAA
TGTACAACATAAGATATAAATAACCATAGCTCCATATTGTAGCACATATTGTATTTCTTGCTCC
ATTGCTCTTTCCTAACAAAACATTTCCACGGTTTTCCATTTACTTATCAATTCAGACATCAACA
AGGTATCTAACATATCATTTGGTTTTTTATCTAATTTTATGTTGCCAAACAATATTTAAAATCA
ATAATGTTGAAGAACTGGGTAACACTGATTAAACCTATGAAATAAAATCACACCTGAAGAGATT
CTGCGTCAGTTGAAATCAAATTGGTTATCCTCCCAGAGGCAAACTTCTTTCGACTATCATTAGT
TAGTCGCAAAGACTTACGGAAAACAGCTGCGATCTGCGAAACAACAGAATCATGGCATAAGCGT
GTAACTAAACATATAACAGCAGCTGAGATGGCTATGGTAGTGTTACTTGCAGGAAAGTCAATTA
TTACCAGATAATATTATATCATGGTGAACATAAGAAAAATAAAGGTCTAAACTTAATATAACAA
TTACACATGTCCTTGATGCATAAATCAGGAAGTTCAATGCTCAAGATAACCATGGGAGTAGAGA
AAAAAAAAAGAGTGGTCCAGAAAAATAGTGGAACAAGTGGTTTGCTGGTTGCCTGTTGACATCA
TATTAAACCATGCTAAACAAGCAACACCTACCAATGTTGACCTCAACCTGAAACCCGTTCGCAT
GACATTCTGAAAGTACTGTGCTTCAGAAAGAACACCCAGTGA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 30524086-30524065(-)
Potential amino acid sequence MRTGFRLRSTLIAAVFRKSLRLTNDSRKKFASGRITNLISTDAESLQQVCQQLHSLWSAPFRIV
IAMVLLYAQLGPAALVGAAMLVLLFPIQTVIISKMQKLTKEGLQRTDRRISLMNEILAAMDTVK
CYAWEQSFQSKVQDIRDDEISWFRSAQLLAALNSFILNSIPVIVTVVSFGVYSLLGGDLTPAKA
FTSLSLFAVLRFPLFMLPNLITQVVNCKVSLKRLEDLLLAEERLLLPNPPLDPELPAISIKNGY
FSWESQAERPTLSNVNLDVPMGSLVAIVGSTGEGKTSLISAMLGEIPPVSGSNTSVVLRGTVAY
VPQVSWIFNATVRDNILFGSPFQPPRYEKAIDVTSLRHDLDLLPGGDLTEIGERGVNISGGQKQ
RVSMARAVYSDSDVYIFDDPLSALDAHVGRQIGTLSGCYRVIASIRYGTPFVTVFDKCIKEELQ
HKTRVLVTNQLHFLPYVDKILVVHDGVIKEEGTFDELSNSGELFKKLMENAGKMEEQMEEKQDE
SKRQDDIKHPENGGSVIADGDMQKSQDTSNKTKQGKSVLIKQEERETGVISAKVLSRHWVFFLK
HSTFRMSCERVSG*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021