Detail information of BGIOSGA014328_circ_g.5


General Information
CircRNA Name BGIOSGA014328_circ_g.5
ID in PlantcircBase osi_circ_005744
Alias 4:30520670|30523733
Organism Oryza sativa ssp. indica
Position chr4: 30520670-30523733  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA014328
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014328_circ_g.7 BGIOSGA014328_circ_g.8 BGIOSGA014328_circ_g.9 BGIOSGA014328_circ_igg.1 BGIOSGA014328_circ_g.2 BGIOSGA014328_circ_g.3 BGIOSGA014328_circ_g.4 BGIOSGA014328_circ_g.6 BGIOSGA014328_circ_igg.7 BGIOSGA014328_circ_g.8 BGIOSGA014328_circ_g.9 BGIOSGA014328_circ_g.10 BGIOSGA014328_circ_g.11 BGIOSGA014328_circ_g.12 BGIOSGA014328_circ_igg.13 BGIOSGA014328_circ_igg.14 BGIOSGA014328_circ_igg.15 BGIOSGA014328_circ_igg.16
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA014328-TA:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTCTGCGTCAGTTGAAATCAAATTGGTTATCCTCCCAGAGGCAAACTTCTTTCGACTATCATT
AGTTAGTCGCAAAGACTTACGGAAAACAGCTGCGATtgggagtaagtcaaggtcatgccgtaat
gaagtgacatctattgctttctcgtagcgtggaggttggaagggagacccaaacaatatattgt
cccggacc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGGGAGTAAGTCAAGGTCATGCCGTAATGAAGTGACATCTATTGCTTTCTCGTAGCGTGGAGGT
TGGAAGGGAGACCCAAACAATATATTGTCCCGGACCTGCAGAGATGATAACATTATATCTGTAG
AAGCCATAAAAGGTTCAATATAACAATCAACATAAATGGAGATATTGTGTCTCACAGTTGCATT
GAAGATCCATGAAACTTGAGGAACATAAGCCACTGTTCCACGAAGGACCACCGATGTATTCGAT
CCTGACACTGGTGGTATTTCACCAAGCATTGCAGAAATAAGAGAAGTCTTCCCCTCCCCAGTGC
TTCCTACTATTGCAACCAAACTGCCCATAGGTACATCCAGATTGACGTTTGATAATGTTGGTCT
CTCAGCCTGCCAAAATTTGAAAAATTAGTTTTTGGAGCAACATCATAAGATTAGAGGAAACATG
CAGTGTTAACAACTGTATAAAATTATGTGACAAAAATGGAAACCAATAAGAGCTGGTCAGAATA
GTATTGTGAAGCTTACTACCAAATCATCAATTCATTATGAACTACGGAGACATCTGTAATAGAC
ATCTTTCTATGGATCGACCTCACTACCTCAGTAACTAGATGCTCTCTTTTGCACTGACCTTGCC
ATTCATGAAGCATGCTAGTCTATCAATACTCTAATTCAGTATTTATTTGCCCAAACTTTTGTTT
CTTTTCAGTACTCCAGACAACAGAACAATAATATATGTGTTATATTATAATATCAATGAATGAT
GAGAGTTGAATGTGTGATAGTCAACATAGATATATTTAGATACCAGGCAAATATCTGAAACATG
AAATTACCTGCGATTCCCATGAAAAATATCCATTCTTAATAGAAATTGCTGGAAGCTCAGGATC
AAGAGGTGGATTGGGCAGAAGTAATCTCTCTTCAGCCAAGAGGAGATCTTCCAGACGTTTCAAT
GACACTTTACAATTAACCACCTGTCAAATTTAAAAGGAAAAAAAATAGTAAGGTGACTGTGAGT
ACTAACAAAAGAGTCGTTGAACAAGAAAAGCAGAGAACTATCTCAAGCCAGCATTGGACTGTGA
CCAAAATTGTAAAAACCATTGTACTAATTTTCTCTGCCAAAGACAGATGAAAATTAACTGGTAC
AAGAATGATTATCAATCCAAACATATAAGTTCAGAAAATGATATACTTCTTAACTTGTACAGAA
AGTGGGAAACTTAACAAGACATAATTTACAGCTTTTTGCACACCTGAGTTATCAGATTTGGCAG
CATAAAAAGTGGAAATCTTAAGACAGCAAACAGTGAAAGTGATGTGAACGCCTTTGCTGGTGTC
AAGTCACCTCCCAGCAGAGAGTATACACCAAATGAAACCACAGTGACAATAACGGGGATACTGT
TTAGGATGAAGCTATTCAGCTGCAGCAGACAAGGAAAAATACAAAAGATAATAGTGAGCCGACA
ATAAGGGATGCAACAACTCATTCTCATATCTATTTTAAGTTTGAGTAACTAAGTACATTATTGT
AAACAAACTTTATAGGACCAGGAAGCACCAGTACAATCGATACTATAGCATGCAACTCCAAAAC
TTATTGTGTAATAAGGAGAGTTCATGGATGCACGATTAAAAAAGAGATCATATATAGCAGAATG
AAATTGACACAAGTGAAAGATAACTTAAATACAAAATGGACATACCGCAGCAAGCAATTGAGCG
CTGCGGAACCATGAAATTTCATCATCACGGATGTCCTGCACTTTTGACTGGAAACTTTGCTCCC
AAGCATAACATCTAACCAAGAAAATGTTTGGAACAGTTTATACCAAAATTTTAGTACTACTTCT
AGTAAAAACACAAGTAAATGTAAAGCATACTTGACCGTATCCATTGCAGCTAATATTTCATTCA
TTAGACTGATTCTCCTGTCAGTCCTTTGCAACCCTTCCTTGGTAAGTTTTTGCATTTTGCTTAT
GATAACAGTCTGGTAAATTAAATAAAGAAAATGTTAACAGTCAGATCTATGTTGAAAGTAGCAA
AAGTTTGCTTAAAAGTAAAATCGTTATTTGAAATGCATATATCATTCATAAAAATAGCATAATC
TGAAAATCAGCAACTGTTAAGTGCCCTGGCAATTTGCATTATAAGCTTCAAAAGAGAAAGCATG
AGCAATATGGATTAGCCAAATATTAGGGATTTAAGCATTGACTTGATCAACTCCAATTTATGGA
CAACATCAAAGAATTTCTTACGGGGTATGGCAGAAAACTAAGCAGACGTACAAACAGTACTACA
ATACAACCTCAGGATAGATAACAGGAAGTAGAATCAACAACTAAATGATGGCATGAAAGACTCT
AATGTGAACTCTAGGCTCCATATAAGAATCGATATATCAGTACAATCTTTCTGCACATTCCCTA
AAAAGAATCAAAATATAAAAAACACAAAGTAGATATTGGTAATGTAGGGACCAGATAGAAAGTT
AAAAATGCAACATAAGACCTTCCATAATTGAATGTCTAAAGAGAAATCTACCTGAATTGGGAAC
AAAAGAACCAACATGGCTGCACCGACCAATGCAGCAGGGCCTAGTTGTGCGTATAGAAGGACCA
TGGCAATAACAATGCGGAAAGGAGCAGACCATAGACTGTGAAGTTGCTGGCACACTTGCTGCAA
AAGTAAAAAAAGTACAAACCAAATGTACAACATAAGATATAAATAACCATAGCTCCATATTGTA
GCACATATTGTATTTCTTGCTCCATTGCTCTTTCCTAACAAAACATTTCCACGGTTTTCCATTT
ACTTATCAATTCAGACATCAACAAGGTATCTAACATATCATTTGGTTTTTTATCTAATTTTATG
TTGCCAAACAATATTTAAAATCAATAATGTTGAAGAACTGGGTAACACTGATTAAACCTATGAA
ATAAAATCACACCTGAAGAGATTCTGCGTCAGTTGAAATCAAATTGGTTATCCTCCCAGAGGCA
AACTTCTTTCGACTATCATTAGTTAGTCGCAAAGACTTACGGAAAACAGCTGCGAT
Conservation Information
Conserved circRNAs osa_circ_025325*
PMCS
Functional Information
Coding potential Y
Potential coding position 30523296-30520672(-)
30520709-30523702(-)
Potential amino acid sequence MVLLYAQLGPAALVGAAMLVLLFPIQTVIISKMQKLTKEGLQRTDRRISLMNEILAAMDTVKCY
AWEQSFQSKVQDIRDDEISWFRSAQLLAALNSFILNSIPVIVTVVSFGVYSLLGGDLTPAKAFT
SLSLFAVLRFPLFMLPNLITQVVNCKVSLKRLEDLLLAEERLLLPNPPLDPELPAISIKNGYFS
WESQAERPTLSNVNLDVPMGSLVAIVGSTGEGKTSLISAMLGEIPPVSGSNTSVVLRGTVAYVP
QVSWIFNATVRDNILFGSPFQPPRYEKAIDVTSLRHDLDLLPIAAVFRKSLRLTNDSRKKFASG
RITNLISTDAESLQQVCQQLHSLWSAPFRIVIAMVLLYAQLGPAALVGAAMLVLLFPIQTVIIS
KMQKLTKEGLQRTDRRISLMNEILAAMDTVKCYAWEQSFQSKVQDIRDDEISWFRSAQLLAALN
SFILNSIPVIVTVVSFGVYSLLGGDLTPAKAFTSLSLFAVLRFPLFMLPNLITQVVNCKVSLKR
LEDLLLAEERLLLPNPPLDPELPAISIKNGYFSWESQAERPTLSNVNLDVPMGSLVAIVGSTGE
GKTSLISAMLGEIPPVSGSNTSVVLRGTVAYVPQVSWIFNATVRDNILFGSPFQPPRYEKAIDV
TSLRHDLDLLPIAAVFRKSLRLTNDSRKKFASGRITNLISTDAESLQQVCQQLHSLWSAPFRIV
IAMVLLYAQLGPAALVGAAMLVLLFPIQTVIISKMQKLTKEGLQRTDRRISLMNEILAAMDTVK
CYAWEQSFQSKVQDIRDDEISWFRSAQLLAALNSFILNSIPVIVTVVSFGVYSLLGGDLTPAKA
FTSLSLFAVLRFPLFMLPNLITQVVNCKVSLKRLEDLLLAEERLLLPNPPLDPELPAISIKNGY
FSWESQAERPTLSNVNLDVPMGSLVAIVGSTGEGKTSLISAMLGEIPPVSGSNTSVVLRGTVAY
VPQVSWIFNATVRDNILFGSPFQPPRYEKAIDVTSLRHDLDLLPIAAVFRKSLRLTNDSRKKFA
SGRITNLISTDAESLQQVCQQLHSLWSAPFRIVIAMVLLYAQLGPAALVGAAMLVLLFPIQTVI
ISKMQKLTKEGLQRTDRRISLMNEILAAMDTVKCYAWEQSFQSKVQDIRDDEISWFRSAQLLAA
LNSFILNSIPVIVTVVSFGVYSLLGGDLTPAKAFTSLSLFAVLRFPLFMLPNLITQVVNCKVSL
KRLEDLLLAEERLLLPNPPLDPELPAISIKNGYFSWESQAERPTLSNVNLDVPMGSLVAIVGST
GEGKTSLISAMLGEIPPVSGSNTSVVLRGTVAYVPQVSWIFNATVRDNILFGSPFQPPRYEKAI
DVTSLRHDLDLLP(-)
MSLHYGMTLTYSQSQLFSVSLCD*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021