Detail information of BGIOSGA014328_circ_igg.7


General Information
CircRNA Name BGIOSGA014328_circ_igg.7
ID in PlantcircBase osi_circ_005746
Alias 4:30521509|30526356
Organism Oryza sativa ssp. indica
Position chr4: 30521509-30526356  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA014328_circ_g.7 BGIOSGA014328_circ_g.8 BGIOSGA014328_circ_g.9 BGIOSGA014328_circ_igg.1 BGIOSGA014328_circ_g.2 BGIOSGA014328_circ_g.3 BGIOSGA014328_circ_g.4 BGIOSGA014328_circ_g.5 BGIOSGA014328_circ_g.6 BGIOSGA014328_circ_g.8 BGIOSGA014328_circ_g.9 BGIOSGA014328_circ_g.10 BGIOSGA014328_circ_g.11 BGIOSGA014328_circ_g.12 BGIOSGA014328_circ_igg.13 BGIOSGA014328_circ_igg.14 BGIOSGA014328_circ_igg.15 BGIOSGA014328_circ_igg.16
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCACACCCCGCCATTGACCGGCTGGCAGTACCATTCCAGTGGATCAAAACCCATGTCAAACCG
TCCCCTTAGCAACCCTCACTCAGTTTTGATCTTCCCctgcgattcccatgaaaaatatccattc
ttaatagaaattgctggaagctcaggatcaagaggtggattgggcagaagtaatctctcttcag
ccaagagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGCGATTCCCATGAAAAATATCCATTCTTAATAGAAATTGCTGGAAGCTCAGGATCAAGAGGT
GGATTGGGCAGAAGTAATCTCTCTTCAGCCAAGAGGAGATCTTCCAGACGTTTCAATGACACTT
TACAATTAACCACCTGTCAAATTTAAAAGGAAAAAAAATAGTAAGGTGACTGTGAGTACTAACA
AAAGAGTCGTTGAACAAGAAAAGCAGAGAACTATCTCAAGCCAGCATTGGACTGTGACCAAAAT
TGTAAAAACCATTGTACTAATTTTCTCTGCCAAAGACAGATGAAAATTAACTGGTACAAGAATG
ATTATCAATCCAAACATATAAGTTCAGAAAATGATATACTTCTTAACTTGTACAGAAAGTGGGA
AACTTAACAAGACATAATTTACAGCTTTTTGCACACCTGAGTTATCAGATTTGGCAGCATAAAA
AGTGGAAATCTTAAGACAGCAAACAGTGAAAGTGATGTGAACGCCTTTGCTGGTGTCAAGTCAC
CTCCCAGCAGAGAGTATACACCAAATGAAACCACAGTGACAATAACGGGGATACTGTTTAGGAT
GAAGCTATTCAGCTGCAGCAGACAAGGAAAAATACAAAAGATAATAGTGAGCCGACAATAAGGG
ATGCAACAACTCATTCTCATATCTATTTTAAGTTTGAGTAACTAAGTACATTATTGTAAACAAA
CTTTATAGGACCAGGAAGCACCAGTACAATCGATACTATAGCATGCAACTCCAAAACTTATTGT
GTAATAAGGAGAGTTCATGGATGCACGATTAAAAAAGAGATCATATATAGCAGAATGAAATTGA
CACAAGTGAAAGATAACTTAAATACAAAATGGACATACCGCAGCAAGCAATTGAGCGCTGCGGA
ACCATGAAATTTCATCATCACGGATGTCCTGCACTTTTGACTGGAAACTTTGCTCCCAAGCATA
ACATCTAACCAAGAAAATGTTTGGAACAGTTTATACCAAAATTTTAGTACTACTTCTAGTAAAA
ACACAAGTAAATGTAAAGCATACTTGACCGTATCCATTGCAGCTAATATTTCATTCATTAGACT
GATTCTCCTGTCAGTCCTTTGCAACCCTTCCTTGGTAAGTTTTTGCATTTTGCTTATGATAACA
GTCTGGTAAATTAAATAAAGAAAATGTTAACAGTCAGATCTATGTTGAAAGTAGCAAAAGTTTG
CTTAAAAGTAAAATCGTTATTTGAAATGCATATATCATTCATAAAAATAGCATAATCTGAAAAT
CAGCAACTGTTAAGTGCCCTGGCAATTTGCATTATAAGCTTCAAAAGAGAAAGCATGAGCAATA
TGGATTAGCCAAATATTAGGGATTTAAGCATTGACTTGATCAACTCCAATTTATGGACAACATC
AAAGAATTTCTTACGGGGTATGGCAGAAAACTAAGCAGACGTACAAACAGTACTACAATACAAC
CTCAGGATAGATAACAGGAAGTAGAATCAACAACTAAATGATGGCATGAAAGACTCTAATGTGA
ACTCTAGGCTCCATATAAGAATCGATATATCAGTACAATCTTTCTGCACATTCCCTAAAAAGAA
TCAAAATATAAAAAACACAAAGTAGATATTGGTAATGTAGGGACCAGATAGAAAGTTAAAAATG
CAACATAAGACCTTCCATAATTGAATGTCTAAAGAGAAATCTACCTGAATTGGGAACAAAAGAA
CCAACATGGCTGCACCGACCAATGCAGCAGGGCCTAGTTGTGCGTATAGAAGGACCATGGCAAT
AACAATGCGGAAAGGAGCAGACCATAGACTGTGAAGTTGCTGGCACACTTGCTGCAAAAGTAAA
AAAAGTACAAACCAAATGTACAACATAAGATATAAATAACCATAGCTCCATATTGTAGCACATA
TTGTATTTCTTGCTCCATTGCTCTTTCCTAACAAAACATTTCCACGGTTTTCCATTTACTTATC
AATTCAGACATCAACAAGGTATCTAACATATCATTTGGTTTTTTATCTAATTTTATGTTGCCAA
ACAATATTTAAAATCAATAATGTTGAAGAACTGGGTAACACTGATTAAACCTATGAAATAAAAT
CACACCTGAAGAGATTCTGCGTCAGTTGAAATCAAATTGGTTATCCTCCCAGAGGCAAACTTCT
TTCGACTATCATTAGTTAGTCGCAAAGACTTACGGAAAACAGCTGCGATCTGCGAAACAACAGA
ATCATGGCATAAGCGTGTAACTAAACATATAACAGCAGCTGAGATGGCTATGGTAGTGTTACTT
GCAGGAAAGTCAATTATTACCAGATAATATTATATCATGGTGAACATAAGAAAAATAAAGGTCT
AAACTTAATATAACAATTACACATGTCCTTGATGCATAAATCAGGAAGTTCAATGCTCAAGATA
ACCATGGGAGTAGAGAAAAAAAAAAGAGTGGTCCAGAAAAATAGTGGAACAAGTGGTTTGCTGG
TTGCCTGTTGACATCATATTAAACCATGCTAAACAAGCAACACCTACCAATGTTGACCTCAACC
TGAAACCCGTTCGCATGACATTCTGAAAGTACTGTGCTTCAGAAAGAACACCCAGTGACTGCAG
AATGGTAAACAAAAGGTAAGTGATCAAAAGTCTGTCCAGTTTTGGCTCACATGCAGCATAATTG
TTGCTTGGAAGTTCAAATACACTGAATCAACAAGACATATAAGTGTGAAACATGCAATAGAAGA
AAATAATCCATACCACTCCAGCGAAGATTGAGAAAGCATAGATGTAACCGCTCCAAGATGGATC
ACCTTTTTGCATAGACTGCCAAAAGAACATTGACCTTTAGTGGTACAAAGCACCTAACACTAGC
ATCTCAACAACATAAGAGAAAAGTTGGATCTATTCTTTCATATATAAATATTAAAATCTGCACA
ATTACCCAGTATGTTTTGAATTACTTCACAAGTTTGTTGATGGTAAAAACAATAGTAGAATAAG
GCTTGTAAAGGTAATGCAATGCAATTTTATTGCCATTGGTTCATGAAACTAGAAGCATACCTCC
AACAAGAGGTTCAATATGAGTGGGCCAACAAACTGAGAAGCATCATTGCCAATCTACAAAATTT
TGGAGGAAAAAGGATGAGTTGCCAGGAATAACACAAAATGCTTGCCATCAAACAAAAATGCAAA
CGAAATTGAAGGATAACTTTACAAAAGTCGAGATACATTTACCTACCTTAAAAAATCCTCCTAG
CCAAAACCTGAAAATGAATGAAACCAATCACTACGTGAACACAAACAATGTAGCAAGAAGGGAC
CACCCTAAAGGTTTACTGGAAAATATAGCTATCATCTGTACAAATATACCTTCCACCAAGGCTG
CTATGCAGAGCCCGTAACAGCCAAGGCTTTGGTTTTTGAAGCTCATTGTTCCAGCATTTTTGGA
ACCTGAGGAAAGATTATAAGGTTAAGATCTGCATATACAAGTGTTTCTCATTTCAGTAAAAATG
GTTGCAGAACATACTGGTTGTACAATGTTTCAGTCTCATCCCAACTGTCTAATTTCCAAATATC
CTTATCGGTGATGGGCCTTTTAAATCCTTGTTGCATTAGAGGAGTCATCCATGAAAAGAATATC
CCTAGCAAGGTAAGACAACCAAAAAGCCTCAGTGTGCTTCTAGAAATTTAGAGAAATTATGAGG
ACAAACAAAACATTATGGATGTATGCAATAGTGTGGCACAACAGCACAACTTATTATATTTACT
CACTGGAAAATATATTAGCATGCCTCTCAGGGCAAATCTGCTCCCCACCAGGCAGAGGTTCGTA
ATCAGTATTATCAACAAGTGCCTCATGCCTGACTGGAGTATAACCCGGATAGGAATCCAAGCTA
GGCAGATAAACCACCATGAGAATTCCAAACAAGAGCTGCAGAGATGATAAGTTCAGTATACGAC
AAATATCACTACAGTACGATTATTAAGATAACAAGAATGCAAACCTTGAATATTATCTCACTGC
AGTACAAGTAAAATATTGAACTGCATAACCAAAATACAGAAGTCAGTCTTCATTGAAAAATTTA
GAGTATAAAGTTCTCTATCAATCAACATTCAATAAATTTCATGAATAAAGCATGTCTCATGTGT
ACTATACCTCGAACTATAATACTGCCTTACTGAAAGCACAAGATTGAACATAGCAGCTTCCCCA
ACCAAGATGTAAATGACCACAAACCGGATGTACCATCTAAACTCATAGATGTAAATTCTTGTCT
CGAGTGCAATCATTACAAGCATACAACACCAAGCAGCAATCTCAATGATAGATGAGGTAACCTG
TAGAGGCAGAATTACGTGATTGAAAAGGTCAAGGGATGCAAGAATTCGGTAGAAGTAAAATTCT
GAACAAGTGTGCTTAACTCTACGTGCTGATACACTTATACTTGGGACATGTTCTCACCTCAAAT
GGAGCAAGGCTAGTCTCCCCATCCAAGTTCATTATGGAGGTGCCAGTAGCGATCCGATACAGTG
ATTCAGCTATGCACAACACCACAAGCAGGCCGAGCATATAGTTGTAGTATGGCGACCGCAATTT
GTAGCGCTGCACCGTGTAGTCCCTCGTCGTCCTCCATATCCGATAGAAGCAAACACCGAAGAGT
GCAAAGTATGAGATGCACACCACCAAGGTTTCAGTGCCACATGGTGTGTATGCACCAAAAGCAT
TCTCTACATCTGACCACACCCCGCCATTGACCGGCTGGCAGTACCATTCCAGTGGATCAAAACC
CATGTCAAACCGTCCCCTTAGCAACCCTCACTCAGTTTTGATCTTCCC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021