Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os03g0846400_circ_g.7 |
ID in PlantcircBase | osa_circ_022698 |
Alias | NA |
Organism | Oryza sativa |
Position | chr3: 35591955-35593931 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder |
Parent gene | Os03g0846400 |
Parent gene annotation |
Peptidase, trypsin-like serine and cysteine domain containing pr otein. (Os03t0846400-01) |
Parent gene strand | + |
Alternative splicing | Os03g0846400_circ_g.1 Os03g0846400_circ_g.2 Os03g0846400_circ_g.3 Os03g0846400_circ_g.4 Os03g0846400_circ_g.5 Os03g0846400_circ_g.6 Os03g0846400_circ_g.8 |
Support reads | 1 |
Tissues | shoot, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os03t0846400-01:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.103505336 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
35593891-35592023(+) 35592257-35593928(+) 35591977-35592787(-) |
Potential amino acid sequence |
MERDRVSYLTVIQKETYRYMHAQAQLSVARRGLVQFF*(+) MESLDVHVVLSEHLKDRYAKKKLVAVSRNKYGGLITKSVMVGSHHNSNRSEVCHDISVMAEDWE GGPLFDFDGKFVGMNKFLAMDTTFILSWMSILIIFKHYLPTLQNRILKRLQNLKRVRDGEGPGE LSDCHPEGNIPIYACSGTAISCQEGSGTIFLTSASLVRAFYDTEEIYDNLKIEVRHEGNEVYKG YLAKYDLDKNFAVVYTMESLDVHVVLSEHLKDRYAKKKLVAVSRNKYGGLITKSVMVGSHHNSN RSEVCHDISVMAEDWEGGPLFDFDGKFVGMNKFLAMDTTFILSWMSILIIFKHYLPTLQNRILK RLQNLKRVRDGEGPGELSDCHPEGNIPIYACSGTAISCQEGSGTIFLTSASLVRAFYDTEEIYD NLKIEVRHEGNEVYKGYLAKYDLDKNFAVVYTMESLDVHVVLSEHLKDRYAKKKLVAVSRNKYG GLITKSVMVGSHHNSNRSEVCHDISVMAEDWEGGPLFDFDGKFVGMNKFLAMDTTFILSWMSIL IIFKHYLPTLQNRILKRLQNLKRVRDGEGPGELSDCHPEGNIPIYACSGTAISCQEGSGTIFLT SASLVRAFYDTEEIYDNLKIEVRHEGNEVYKGYLAKYDLDKNFAVVYTMESLDVHVVLSEHLKD RYAKKKLVAVSRNKYGGLITKSVMVGSHHNSNRSEVCHDISVMAEDWEGGPLFDFDGKFVGMNK FLAMDTTFILSWMSILIIFKHYLPTLQNRILKRLQNLKRVRDGEGPGELSDCHPE(+) MHISVCFLLDDSQIAHPVPLHP*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |