Detail information of Os03g0846400_circ_g.7


General Information
CircRNA Name Os03g0846400_circ_g.7
ID in PlantcircBase osa_circ_022698
Alias NA
Organism Oryza sativa
Position chr3: 35591955-35593931  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene Os03g0846400
Parent gene annotation Peptidase, trypsin-like serine and cysteine domain containing pr
otein. (Os03t0846400-01)
Parent gene strand +
Alternative splicing Os03g0846400_circ_g.1 Os03g0846400_circ_g.2 Os03g0846400_circ_g.3 Os03g0846400_circ_g.4 Os03g0846400_circ_g.5 Os03g0846400_circ_g.6 Os03g0846400_circ_g.8
Support reads 1
Tissues shoot, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0846400-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCATATTAATGCACTGGTATGACCTGTTTTACCTTTGGGTTGTTGTTCTTCTGCAGGGATGGAG
AGGGACCGGGTGAGCTATCTGACTGTCATCCAGAAGgaaacataccgatatatgcatgctcagg
cacagctatcagttgccaggaggggtctggtacaatttttctgacttcggctagtttggttaga
gctttcta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAAACATACCGATATATGCATGCTCAGGCACAGCTATCAGTTGCCAGGAGGGGTCTGGTACAAT
TTTTCTGACTTCGGCTAGTTTGGTTAGAGCTTTCTATGATACTGAAGAAATTTATGATAACTTA
AAGGTTGGTGCTGCTAGTCATCCTTTACTAATTTTCGCTTGTTTGCTTAGGATATTTGTGACTT
GTTTCTTGCTTTGTCATTATAGATTGAAGTGCGCCATGAAGGCAATGAAGTGTACAAGGGTTAT
TTGGCAAAATATGATTTAGACAAGAACTTTGCTGTTGTCTACACCATGGAGTCTCTTGATGTTC
ATGTTGTACTTTCCGAACATTTGAAGGATAGGTATGCCAAAAAGAAGCTAGTAGCTGTATCGCG
TAACAAGTATGGCGGATTAATTACCAAAAGTGTGATGGTGGGTAGTCATCATAATTCAAACAGA
TCTGAAGTTTGCCATGACATTTCGGTGATGGCTGAGGTACACTCGCATTAATACAAGCACATTT
TGACACTTTTCTGTTACCATATGCGCTAAACTTTATCAGAGCCTATAAAAATGGTCTTTTTTTT
TCTATGCAACTCTTGTTCAATATCACTTTGTTTTGTTGAAATGTAACCCTTGTTGACCATCACT
TTATATTTGTGTTAGGACTGGGAAGGTGGACCTCTCTTTGACTTTGATGGGAAATTTGTTGGCA
TGAATAAGTTTTTGGCTATGGATACAACCTTTATCCTGTCATGGATGTCAATTCTCATTATCTT
TAAGCATTATTTGCCAACCCTGCAAAACAGGATTCTTAAACGGTTACAAAATTTGAAAAGAGTC
AGGTATGCCTTACTGATGTTTGCCTCTCGCTGGTTCACCCACTTTTTTCTATCCTCTTACCCTA
CATGAGTTTATATACAGTAGGCTGATTTGCATGCAAACACATATGAGCTCTTATATGTTCTGCA
ATGATCTGGATCAATAGCTGTTGGTTCTTAGCCACCTGTACCAAGGCAGTTGACGTCCATTTGT
GTGTATCACAGTCAGTGCAGTCAAAAGTGTTAAACAAGCCCTCCTCCCCTTTTAGGTCTTAAGT
GCAACTGTGCAAGGTGCTAGGGCACACAAGTGCTCACTCTAGAGGAAAAACAGTGAGGAAGAAA
AAAAAAAGGATGAATAGGCTAAGCTGAGCTTCTCATCCTGCCTCCTTTGGCCACCTTCCTCGCC
TGTCAGTGAGCTTGGTCCAAAAGCTACTGCTTTGCCCTCCTAGGAAGCACTGTGAGCTCGGTCT
GGCAGCTGTGCGAGCTTGGTCTGGCTAGGTTAGAGGGAAAGGAGAAGGGATAGGGGCATGCATG
GTTGTCATTATCGTGCTGAGGGAATAGTAGAGGGGCAATGTGTGGCACACAACGAGAGAACCGT
GCTGCTGAACAGAGGATAACGCCTTGATGCGTCCTTGTCTGATTTATGGTTTTTGAAGAAGCAA
ACGGAGGTGAATGAGCACTGTGGGCTGTTTGGTTGATTGAGAGGTAGGACTAGTGGGCTAGTTC
ATATTTGTCAGATGCACGCCTGTTTTCCCCATTTGCTCTTTTCGCCTAAGGTGACAAGATGACA
GCGTGCATTCGTTTTTCACTTGAACCAATAATAATTTTGCTGTATAAATTAGTCATATTTCTTG
TTTCCATTGGTGAAGCCTGTTTTGTCTAATTTAAAGGAAATGTGCACACTAAAGGGATTATGAT
ATTTCACAGTTCTGGTGATCTTTTGATGCTCAACTTACCCCTTGTTTTCTTGAAATGTGGGTAC
AAACCCACACAACTTGGGATCCTCTTTTCTCTCTCTGTTTTACCCTTGCCTATGATGCTACCGT
GGTAGGTTTTTGTACTGTGTTGCATATTAATGCACTGGTATGACCTGTTTTACCTTTGGGTTGT
TGTTCTTCTGCAGGGATGGAGAGGGACCGGGTGAGCTATCTGACTGTCATCCAGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.103505336
Functional Information
Coding potential Y
Potential coding position 35593891-35592023(+)
35592257-35593928(+)
35591977-35592787(-)
Potential amino acid sequence MERDRVSYLTVIQKETYRYMHAQAQLSVARRGLVQFF*(+)
MESLDVHVVLSEHLKDRYAKKKLVAVSRNKYGGLITKSVMVGSHHNSNRSEVCHDISVMAEDWE
GGPLFDFDGKFVGMNKFLAMDTTFILSWMSILIIFKHYLPTLQNRILKRLQNLKRVRDGEGPGE
LSDCHPEGNIPIYACSGTAISCQEGSGTIFLTSASLVRAFYDTEEIYDNLKIEVRHEGNEVYKG
YLAKYDLDKNFAVVYTMESLDVHVVLSEHLKDRYAKKKLVAVSRNKYGGLITKSVMVGSHHNSN
RSEVCHDISVMAEDWEGGPLFDFDGKFVGMNKFLAMDTTFILSWMSILIIFKHYLPTLQNRILK
RLQNLKRVRDGEGPGELSDCHPEGNIPIYACSGTAISCQEGSGTIFLTSASLVRAFYDTEEIYD
NLKIEVRHEGNEVYKGYLAKYDLDKNFAVVYTMESLDVHVVLSEHLKDRYAKKKLVAVSRNKYG
GLITKSVMVGSHHNSNRSEVCHDISVMAEDWEGGPLFDFDGKFVGMNKFLAMDTTFILSWMSIL
IIFKHYLPTLQNRILKRLQNLKRVRDGEGPGELSDCHPEGNIPIYACSGTAISCQEGSGTIFLT
SASLVRAFYDTEEIYDNLKIEVRHEGNEVYKGYLAKYDLDKNFAVVYTMESLDVHVVLSEHLKD
RYAKKKLVAVSRNKYGGLITKSVMVGSHHNSNRSEVCHDISVMAEDWEGGPLFDFDGKFVGMNK
FLAMDTTFILSWMSILIIFKHYLPTLQNRILKRLQNLKRVRDGEGPGELSDCHPE(+)
MHISVCFLLDDSQIAHPVPLHP*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017