Detail information of Os03g0846400_circ_g.3


General Information
CircRNA Name Os03g0846400_circ_g.3
ID in PlantcircBase osa_circ_022694
Alias Os_ciR5380
Organism Oryza sativa
Position chr3: 35591557-35592788  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os03g0846400
Parent gene annotation Peptidase, trypsin-like serine and cysteine domain containing pr
otein. (Os03t0846400-01)
Parent gene strand +
Alternative splicing Os03g0846400_circ_g.1 Os03g0846400_circ_g.2 Os03g0846400_circ_g.4 Os03g0846400_circ_g.5 Os03g0846400_circ_g.6 Os03g0846400_circ_g.7 Os03g0846400_circ_g.8
Support reads 3
Tissues root
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0846400-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTATCCTGTCATGGATGTCAATTCTCATTATCTTTAAGCATTATTTGCCAACCCTGCAAAACAG
GATTCTTAAACGGTTACAAAATTTGAAAAGAGTCAGtcaattcagccattgggcacgtgcggaa
aattaggaggagggctggtcattttctctcaagaagctccaagaataaggctgctcacagtaag
gggggaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TCAATTCAGCCATTGGGCACGTGCGGAAAATTAGGAGGAGGGCTGGTCATTTTCTCTCAAGAAG
CTCCAAGAATAAGGCTGCTCACAGTAAGGGGGGACAGACAACCAAGTCATTGATCTCAGGTCCG
CTGGCTTCCCTTATATGCATATCTTCTTTTCACCTCTATTTGAGAACTAACACGTGTTTTATAG
TGTTTTAAACCAGGCGACTTACATTCGGGCTCTATTCAAGATGTCTGGGCTACTCTCAGCGCTG
AAGTTGCATCAAAATTGTCTAAAAGCGTTGTTTCTCTGGCTTTGTCTGATGGTGATATATGTTA
CCGTTATACATACATTCACAAATTTATATTTTAATAGTGTCCCCGGTTATAAATGGTTTAACCT
GCAATCTTGTGTAGGAAACATACCGATATATGCATGCTCAGGCACAGCTATCAGTTGCCAGGAG
GGGTCTGGTACAATTTTTCTGACTTCGGCTAGTTTGGTTAGAGCTTTCTATGATACTGAAGAAA
TTTATGATAACTTAAAGGTTGGTGCTGCTAGTCATCCTTTACTAATTTTCGCTTGTTTGCTTAG
GATATTTGTGACTTGTTTCTTGCTTTGTCATTATAGATTGAAGTGCGCCATGAAGGCAATGAAG
TGTACAAGGGTTATTTGGCAAAATATGATTTAGACAAGAACTTTGCTGTTGTCTACACCATGGA
GTCTCTTGATGTTCATGTTGTACTTTCCGAACATTTGAAGGATAGGTATGCCAAAAAGAAGCTA
GTAGCTGTATCGCGTAACAAGTATGGCGGATTAATTACCAAAAGTGTGATGGTGGGTAGTCATC
ATAATTCAAACAGATCTGAAGTTTGCCATGACATTTCGGTGATGGCTGAGGTACACTCGCATTA
ATACAAGCACATTTTGACACTTTTCTGTTACCATATGCGCTAAACTTTATCAGAGCCTATAAAA
ATGGTCTTTTTTTTTCTATGCAACTCTTGTTCAATATCACTTTGTTTTGTTGAAATGTAACCCT
TGTTGACCATCACTTTATATTTGTGTTAGGACTGGGAAGGTGGACCTCTCTTTGACTTTGATGG
GAAATTTGTTGGCATGAATAAGTTTTTGGCTATGGATACAACCTTTATCCTGTCATGGATGTCA
ATTCTCATTATCTTTAAGCATTATTTGCCAACCCTGCAAAACAGGATTCTTAAACGGTTACAAA
ATTTGAAAAGAGTCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.2182278
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015