Detail information of Os03g0846400_circ_g.5


General Information
CircRNA Name Os03g0846400_circ_g.5
ID in PlantcircBase osa_circ_022696
Alias NA
Organism Oryza sativa
Position chr3: 35591557-35595651  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os03g0846400
Parent gene annotation Peptidase, trypsin-like serine and cysteine domain containing pr
otein. (Os03t0846400-01)
Parent gene strand +
Alternative splicing Os03g0846400_circ_g.1 Os03g0846400_circ_g.2 Os03g0846400_circ_g.3 Os03g0846400_circ_g.4 Os03g0846400_circ_g.6 Os03g0846400_circ_g.7 Os03g0846400_circ_g.8
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os03t0846400-01:13
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGCGTCCTCATGACGATGTGGAAGAGCAAGAACCCCCAGAGGGCTGTGAATACCAGTGCACATA
CAGAAATGGTGAAAGATGGTGCTACCGGTAGAATATtcaattcagccattgggcacgtgcggaa
aattaggaggagggctggtcattttctctcaagaagctccaagaataaggctgctcacagtaag
gggggaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TCAATTCAGCCATTGGGCACGTGCGGAAAATTAGGAGGAGGGCTGGTCATTTTCTCTCAAGAAG
CTCCAAGAATAAGGCTGCTCACAGTAAGGGGGGACAGACAACCAAGTCATTGATCTCAGGTCCG
CTGGCTTCCCTTATATGCATATCTTCTTTTCACCTCTATTTGAGAACTAACACGTGTTTTATAG
TGTTTTAAACCAGGCGACTTACATTCGGGCTCTATTCAAGATGTCTGGGCTACTCTCAGCGCTG
AAGTTGCATCAAAATTGTCTAAAAGCGTTGTTTCTCTGGCTTTGTCTGATGGTGATATATGTTA
CCGTTATACATACATTCACAAATTTATATTTTAATAGTGTCCCCGGTTATAAATGGTTTAACCT
GCAATCTTGTGTAGGAAACATACCGATATATGCATGCTCAGGCACAGCTATCAGTTGCCAGGAG
GGGTCTGGTACAATTTTTCTGACTTCGGCTAGTTTGGTTAGAGCTTTCTATGATACTGAAGAAA
TTTATGATAACTTAAAGGTTGGTGCTGCTAGTCATCCTTTACTAATTTTCGCTTGTTTGCTTAG
GATATTTGTGACTTGTTTCTTGCTTTGTCATTATAGATTGAAGTGCGCCATGAAGGCAATGAAG
TGTACAAGGGTTATTTGGCAAAATATGATTTAGACAAGAACTTTGCTGTTGTCTACACCATGGA
GTCTCTTGATGTTCATGTTGTACTTTCCGAACATTTGAAGGATAGGTATGCCAAAAAGAAGCTA
GTAGCTGTATCGCGTAACAAGTATGGCGGATTAATTACCAAAAGTGTGATGGTGGGTAGTCATC
ATAATTCAAACAGATCTGAAGTTTGCCATGACATTTCGGTGATGGCTGAGGTACACTCGCATTA
ATACAAGCACATTTTGACACTTTTCTGTTACCATATGCGCTAAACTTTATCAGAGCCTATAAAA
ATGGTCTTTTTTTTTCTATGCAACTCTTGTTCAATATCACTTTGTTTTGTTGAAATGTAACCCT
TGTTGACCATCACTTTATATTTGTGTTAGGACTGGGAAGGTGGACCTCTCTTTGACTTTGATGG
GAAATTTGTTGGCATGAATAAGTTTTTGGCTATGGATACAACCTTTATCCTGTCATGGATGTCA
ATTCTCATTATCTTTAAGCATTATTTGCCAACCCTGCAAAACAGGATTCTTAAACGGTTACAAA
ATTTGAAAAGAGTCAGGTATGCCTTACTGATGTTTGCCTCTCGCTGGTTCACCCACTTTTTTCT
ATCCTCTTACCCTACATGAGTTTATATACAGTAGGCTGATTTGCATGCAAACACATATGAGCTC
TTATATGTTCTGCAATGATCTGGATCAATAGCTGTTGGTTCTTAGCCACCTGTACCAAGGCAGT
TGACGTCCATTTGTGTGTATCACAGTCAGTGCAGTCAAAAGTGTTAAACAAGCCCTCCTCCCCT
TTTAGGTCTTAAGTGCAACTGTGCAAGGTGCTAGGGCACACAAGTGCTCACTCTAGAGGAAAAA
CAGTGAGGAAGAAAAAAAAAAGGATGAATAGGCTAAGCTGAGCTTCTCATCCTGCCTCCTTTGG
CCACCTTCCTCGCCTGTCAGTGAGCTTGGTCCAAAAGCTACTGCTTTGCCCTCCTAGGAAGCAC
TGTGAGCTCGGTCTGGCAGCTGTGCGAGCTTGGTCTGGCTAGGTTAGAGGGAAAGGAGAAGGGA
TAGGGGCATGCATGGTTGTCATTATCGTGCTGAGGGAATAGTAGAGGGGCAATGTGTGGCACAC
AACGAGAGAACCGTGCTGCTGAACAGAGGATAACGCCTTGATGCGTCCTTGTCTGATTTATGGT
TTTTGAAGAAGCAAACGGAGGTGAATGAGCACTGTGGGCTGTTTGGTTGATTGAGAGGTAGGAC
TAGTGGGCTAGTTCATATTTGTCAGATGCACGCCTGTTTTCCCCATTTGCTCTTTTCGCCTAAG
GTGACAAGATGACAGCGTGCATTCGTTTTTCACTTGAACCAATAATAATTTTGCTGTATAAATT
AGTCATATTTCTTGTTTCCATTGGTGAAGCCTGTTTTGTCTAATTTAAAGGAAATGTGCACACT
AAAGGGATTATGATATTTCACAGTTCTGGTGATCTTTTGATGCTCAACTTACCCCTTGTTTTCT
TGAAATGTGGGTACAAACCCACACAACTTGGGATCCTCTTTTCTCTCTCTGTTTTACCCTTGCC
TATGATGCTACCGTGGTAGGTTTTTGTACTGTGTTGCATATTAATGCACTGGTATGACCTGTTT
TACCTTTGGGTTGTTGTTCTTCTGCAGGGATGGAGAGGGACCGGGTGAGCTATCTGACTGTCAT
CCAGAAGGTGAGCATAGTGCCATACCTTGCATATATTGTGGTTATCTGTAATGTATCTATTTTT
AAGGTTCTCACTGGTGGTGCGGGATTAGCTTTTACATTTGAAGTTTCTATTTTATATGAACTTA
TCACATCTAATAGTAGTGTATTTCAGTGCTAATCAGTAATCATTTGGCCTTGTGCAGCACCAGT
TCATAGAGGTGGTCTCGATAAGGAACACGTTGAGTATCTAAACTCCTTGGGTTATCCCAAGCCA
CCAGTAAACGTGTTAGATGGTGAGTCGATGTTTGTAAATTTGCTAACTTATTGCGCACCACACC
TTTTGTACACTATTGACTATTCTACCATGTATCTTCTTCCAGATGGCTTGATATTGGCTTATTC
TTTTGAGGAGAATTTTGGCTTTGTATATGGTGAAGTCATTAAAAAGTTTCCTTGTGACATACAT
CAAAGTGTTGTTGCACTTGCTTCATTCAAAGGTGATTTTACACTAAATAATATAATGTGCTATT
CATATTTGCATTTGGTCCTCACTAATAAACAATAATCAAAACTATGCATGTGTGCAGGAGAAAG
GAGATTTTTCGCATGCACGGGTTTTTTTATAGAATGGAAGGGATGTACAATTATTCTGACATCA
GCGAGCTTGGTTGCAGAGTCTGGTGACAGAAACAAGATTGATGAAAACTTGAGGGTGGGTGCTA
ATTAATTAGCTCCTCCTACTTATTCTGCTCTTTGTTTAAGTCTCACTCACTTCATTAATTTATT
TGCAGATTGAAGTGTTGCTTCCAAACGAACAACGCAGACAAGGAACATTACAGCATTATAGTTT
ACACTACAATGTTGCTCTAGTCAGTGTCAACGACATGGATTTCCATGCTCGTCCAGCAAATATG
AAGCTTGACAATGAGTGTCCACCTCAAGTAGCAGCTCTAGGGCGTTGCTTCGAATCAGGCAAAA
TAATGGCTGTATGTGGGGATTTGGTTGACTGGACTGGCACACTTGATTGCAATTTCCTTATACG
TTCCTCATGCAAAACTACTAAGGTATGTACCGCTAGCTAGCTGTTGATTTAAAATTTCTTGTCT
ATTTATACACGGTGATTGATTACAAATGACAATTTGTCCATGTCACTCAACGTAGGCTGGAATC
GGAGGACCTCTTATTGGTTTGGATGGGAAAGTTATTGGCATGAACTTTTATGATAAAAAAATAG
GAACCCCTTACATGCCATGGGATGTAATTCTTAAAATTCTGGCATGTTTTGAGAATGAAAGGTA
TTTGCGGATTTCTTCTCTCTTTTGGTTATTCAAGTGCTTGCCATCTGATGTCTTCATGTTATTT
TTTTTTTTAAAAAAAGACTTGGCTGTAAGATTTGCTAAATATAATTCAATGGTGTGCTTGGCAG
TAGTGCTGCTGAAGTTGGCAATGGTAGTGATCCATCTGATGCGCCTGGCTGGAAAATCCCTGGA
GATGGCAGTGTCAAGCTAAACAGGTTTTCTGATATTATATATATATATATATATATATATATAT
ATATATATAACAGTGCCAAGTTACGTCTCAAAATCCTCATCACATTGCGTATATTGAACTACAT
ACAGGTGGCCTGTGCCCTTGCCATATTGGCGTCCTCATGACGATGTGGAAGAGCAAGAACCCCC
AGAGGGCTGTGAATACCAGTGCACATACAGAAATGGTGAAAGATGGTGCTACCGGTAGAATAT
Conservation Information
Conserved circRNAs NA
PMCS 0.202696561
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017