Detail information of Os11g0473275_circ_g.2


General Information
CircRNA Name Os11g0473275_circ_g.2
ID in PlantcircBase osa_circ_009338
Alias NA
Organism Oryza sativa
Position chr11: 16323174-16323298  JBrowse»
Reference genome IRGSP-1.0.38
Type   ui-circRNA
Identification method CIRCexplorer
Parent gene Os11g0473275
Parent gene annotation Hypothetical protein. (Os11t0473275-00)
Parent gene strand -
Alternative splicing Os11g0473275_circ_igg.1 Os11g0473275_circ_g.1
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   TG-TG
Number of exons covered Os11t0473275-00:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACACATTAGAAATACCATTTACTTCAGTTATAATTGGTTCTAGCTGATATTCAAGGCCTGTTgt
tagtttcctttctaatttttcgaaagagtgatgtggtcaattttcaattacttgttccaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTAGTTTCCTTTCTAATTTTTCGAAAGAGTGATGTGGTCAATTTTCAATTACTTGTTCCAAGA
CACATTAGAAATACCATTTACTTCAGTTATAATTGGTTCTAGCTGATATTCAAGGCCTGTT
Conservation Information
Conserved circRNAs NA
PMCS 0.165333333
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017