Plant Circular RNA Database

Detail information of AT2G33980_circ_g.5

			
						 General Information
					
						CircRNA Name
						AT2G33980_circ_g.5
					
						ID in PlantcircBase
						ath_circ_016351
					
						Alias
						AT2G33980_C2, AT2G33980_C2
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr2: 14352472-14355545  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						CIRI2
					
						Parent gene
						
							AT2G33980						
					
						Parent gene annotation
						
							nudix hydrolase homolog 22
							
						Parent gene strand
						-
					
						Alternative splicing
						
							AT2G33980_circ_g.1 AT2G33980_circ_g.2 AT2G33980_circ_g.3 AT2G33980_circ_g.4 AT2G33980_circ_g.6 AT2G33980_circ_g.7 AT2G33980_circ_g.8 AT2G33980_circ_g.9 AT2G33980_circ_g.10 AT2G33980_circ_g.11 AT2G33980_circ_g.12 AT2G33980_circ_g.13 AT2G33980_circ_g.14 						
					
						Support reads
						NA
					
						Tissues
						leaf
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT2G33980.2:1
AT2G33980.1:4

General Information
CircRNA Name	AT2G33980_circ_g.5
ID in PlantcircBase	ath_circ_016351
Alias	AT2G33980_C2, AT2G33980_C2
Organism	Arabidpsis thaliana
Position	chr2: 14352472-14355545 JBrowse»
Reference genome	TAIR10.38
Type	u-circRNA
Identification method	CIRI2
Parent gene	AT2G33980
Parent gene annotation	nudix hydrolase homolog 22
Parent gene strand	-
Alternative splicing	AT2G33980_circ_g.1 AT2G33980_circ_g.2 AT2G33980_circ_g.3 AT2G33980_circ_g.4 AT2G33980_circ_g.6 AT2G33980_circ_g.7 AT2G33980_circ_g.8 AT2G33980_circ_g.9 AT2G33980_circ_g.10 AT2G33980_circ_g.11 AT2G33980_circ_g.12 AT2G33980_circ_g.13 AT2G33980_circ_g.14
Support reads	NA
Tissues	leaf
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT2G33980.2:1 AT2G33980.1:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ACCTTTGCTCTTGCATCAGATGAATTAGATAACTTAAATCTGTTGATTTCCGATACCAGAGTCA
TCCAAAAAGCATGCTGAAAGACTTTCCAAGAATGAGcttttctttcgcatcagatgtattaatt
tgttccaccagaaaaaccggaaaacatcagaaagcagcacaagcactacccacctgctggcaga
tttttcaa

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 534
Transcript exons: 14352472-14352578,14353899-14353980,14354399-14354645,14
355448-14355545
CTTTTCTTTCGCATCAGATGTATTAATTTGTTCCACCAGAAAAACCGGAAAACATCAGAAAGCA
GCACAAGCACTACCCACCTGCTGGCAGATTTTTCAAGAACGAGCTTTACTTTCAGGTCAAATGG
TTGGGGTTTCACCAAAAAACACACTTCTTGCAAAACGGGAGCTACCCATGTTTTCAAGGAGCAC
ATCCAATATTTGATTATGTGGTAAAGGTCCACTAGGAAAACCACATCCAAATTGTATCCTTGTC
ATCAGATCAACTGGCTTAGTTTCACGGAATCAAAACCACCTTCCTAGATGCAAATCAATCAGAA
ATGGCTCTAAACCTATTACCTGCATCAGTGGCTCTTGAGACATTAGAACATGAAAGAGCTAAAC
AAAGCATCTAGAAGATGGATCTACGCAGCAGCCTTCCCTTTAGCTTTTTAACCTTTGCTCTTGC
ATCAGATGAATTAGATAACTTAAATCTGTTGATTTCCGATACCAGAGTCATCCAAAAAGCATGC
TGAAAGACTTTCCAAGAATGAG
						
					

						Genomic sequence
						
							CTTTTCTTTCGCATCAGATGTATTAATTTGTTCCACCAGAAAAACCGGAAAACATCAGAAAGCA
GCACAAGCACTACCCACCTGCTGGCAGATTTTTCAAGAACGAGCTGCGACAATAACAAAAAGCT
TATTAGCGAAACATCAAGGGAAAATACAGTTCTCTTCTAGATAGGACATATATGCAATCGTGCG
CTTGGCTTTCTGGTATGATTCTTGCTTTTGGTGCAAGAGTTTACCTCTCAGAACCTATGTTATT
AAATCCAGAAGTACGGGAGAAAAAATGTACATATGTGGGGTTTTAATACCTGAGTATAATTTAA
GAAAATTGAACAGTGACATTTCCCAAGAATTTTTACTGAACAAGATCTAAAAATCAGAATGTTT
CACATCAAAATATACAAGGCCAAAAATATGTCAGAACTGGATCAAGTGGCATGATATATGGTAT
GCGCACTTAAGAGACTTGTATGATCCAAGTCAACTTATAAAACAAGATCCAAACTGTAGGCCGA
CTTAGATGCTTCAAAGAAACAAGCATCTTTGCATAAGCACATCAACCAAAACGGACTCTATTTC
AGATATAAGAAATTTAGATTGTATAAATCATTCAAGAAAGGATAAACCCACAACAGCACGTCCT
TAATTATTTTAACTGAGTTAAATCAGCAACAGGGCATTTGGTCTAGTGGTATGATTCTCGCTTA
GGGTGCGAGAGGTCCCGAGTTCAATTCTCGGAATGCCCCCATTCTTTTTTAAGTCTCAGGGGCA
TTCAGGAGACCTACAACCTCACACATCTAAGTAATACAGGATGTGGAGAGCATAGAGCATATCA
GGACTCTATGATAAGCAAGACCATGGTGACATCCTTACGGTCACTAGTTTAGGCATTTTAACAA
GGAAAAATCAAATTTTCAGACATGAAAATAAGACTTTCAAGATTGACTTCATGATCAAAGTAAC
AGATAACAATATGCAAAGTTTATCCTTATCATCAGATCCACTAGCTTAGGTTCCTATAACCAAC
AGCCACCTATCCCGAACCAAATCAATCCTATACTAGTTCGTCAGTTGCACCGGTGGCTTTTCAT
GCACAATAAAGTCAGAGAGCAGAAATTGATTGGTATTAAGAGATCCAAAGGCAACACCATTATC
TATAGTTTTAAAACTAAATTACATCAACAACAGGGCATTTGGTCTAGTGGTATGATTCTCGCTT
TGGGTGCGAGAGGTCCCGAGTTCGATTCTCGGAATGCCCCCACTGACTTTTTCAATAGTCTATG
TACCGTATGGCAATAATTTTTTTTATGGAAAAGTCAACCTTAGGTGCATAATTTTCAAAGATCA
TTCATCTTCAACTAAACATTTGACCAGTTCCAAGAATTTCACCAGCAGTAAATTGGAACATCAT
CCCAAGATTCCCAACGTACCTTTACTTTCAGGTCAAATGGTTGGGGTTTCACCAAAAAACACAC
TTCTTGCAAAACGGGAGCTACCCATGTTTTCAAGGAGCTGTAGCAAAAGGAAAAAAATTGATAA
CACCCAAGTTAACAAAGTTCAGCAAACACACAGAAGATAACAGTAATTGCATTTCAAAAACCGT
TGCTCCAATGAATTACATCAACAACAGGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTG
CGAGAGGTCCCGAGTTCGATTCTCGGAATGCCCCATCAACTAATTTTAATTATTTGTTCTAAAA
CCCATAAAACGTAAGGTCAACAGAATGCATAGTTTTGTGCTTTAACTAGATTCTGAGTATGAGC
TACGACGACTCAACAGATGCACACTTAAATTCTAAAGAAGCAAATTATACTGATCAGAATGTTT
AACATTTCAAGTATACAAAGGCCATAAACTACACATTTTCTATCAGATCTCAGACATTAGACAA
AACTTACCACATCCAATATTTGATTATGTGGTAAAGGTCCACTAGGAAAACCACATCCAAATTG
TATCCTTGTCATCAGATCAACTGGCTTAGTTTCACGGAATCAAAACCACCTTCCTAGATGCAAA
TCAATCAGAAATGGCTCTAAACCTATTACCTGCATCAGTGGCTCTTGAGACATTAGAACATGAA
AGAGCTAAACAAAGCATCTAGAAGATGGATCTACGCAGCAGCCTTCCCTTTAGCTTTTTAACCT
AATTACATCAAGAACTGGGCATCAGGTCTAGTAATATGCTTCTGGCTTATCTTTGTTTCCTAAA
TACCATGGGAATCTCTTAATTCAGGTTACTTCATAACATTTATGGCATGAATATCATGTGCAGG
TGTTCATATAAACAAGGTCAGAGTAATTTAATATGTTCATATAATCAGTGCAAATGGCCAACTG
AAACAAAAGGTAACAAGGTATCTTGCCTTCTGATTCAAGCCTTACCAAACAACTTCAACAATCT
AACCAATATACCATCAGAGTATTTCCAGCCACTAAAATTGTGAACCACAAATTCATTTTCCAAT
GGTCATTCCCTGGATTCTCAGTTGTGAAACAGATCCCACAGATCAGATCTAGGGAAATTCCATT
AAGACTAAAAAATTCATCACAGAAAAGTCAACTACAGGAGCTAGATCTGACAATGTCTTGATAT
GTTTTTCTTTATAGCATCTATAACTCAAGTATTCAGCACCAGGGCATTTGGTCTAGTGGTATGA
TTCTCGCTTCGGGTGCGAGGGGTCCCGAGTTCGATTCTCGGAATGCCCCCGATTTGTTTGACTT
TTTTTTTGCATTTTGTGATAGAAAGCAAGCTCAGCAGGATGATAAGTATATTTATACTTGACTT
TGCACAACCACTTTCAACAAATTTAAATATCTGAAATGTCAAATTTGTGTGATCATGCATATCA
CCTAAATTGCAGTAAGGTCAAATTATCACAACGCATTGTTAAGTTTCCACTATTAAAATTTCAA
AGTCAACAAATAGAACAAGATCTGAAATATACCTTTGCTCTTGCATCAGATGAATTAGATAACT
TAAATCTGTTGATTTCCGATACCAGAGTCATCCAAAAAGCATGCTGAAAGACTTTCCAAGAATG
AG
						
					

			
		

Sequences
Splice junction sequence	ACCTTTGCTCTTGCATCAGATGAATTAGATAACTTAAATCTGTTGATTTCCGATACCAGAGTCA TCCAAAAAGCATGCTGAAAGACTTTCCAAGAATGAGcttttctttcgcatcagatgtattaatt tgttccaccagaaaaaccggaaaacatcagaaagcagcacaagcactacccacctgctggcaga tttttcaa
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 534 Transcript exons: 14352472-14352578,14353899-14353980,14354399-14354645,14 355448-14355545 CTTTTCTTTCGCATCAGATGTATTAATTTGTTCCACCAGAAAAACCGGAAAACATCAGAAAGCA GCACAAGCACTACCCACCTGCTGGCAGATTTTTCAAGAACGAGCTTTACTTTCAGGTCAAATGG TTGGGGTTTCACCAAAAAACACACTTCTTGCAAAACGGGAGCTACCCATGTTTTCAAGGAGCAC ATCCAATATTTGATTATGTGGTAAAGGTCCACTAGGAAAACCACATCCAAATTGTATCCTTGTC ATCAGATCAACTGGCTTAGTTTCACGGAATCAAAACCACCTTCCTAGATGCAAATCAATCAGAA ATGGCTCTAAACCTATTACCTGCATCAGTGGCTCTTGAGACATTAGAACATGAAAGAGCTAAAC AAAGCATCTAGAAGATGGATCTACGCAGCAGCCTTCCCTTTAGCTTTTTAACCTTTGCTCTTGC ATCAGATGAATTAGATAACTTAAATCTGTTGATTTCCGATACCAGAGTCATCCAAAAAGCATGC TGAAAGACTTTCCAAGAATGAG
Genomic sequence	CTTTTCTTTCGCATCAGATGTATTAATTTGTTCCACCAGAAAAACCGGAAAACATCAGAAAGCA GCACAAGCACTACCCACCTGCTGGCAGATTTTTCAAGAACGAGCTGCGACAATAACAAAAAGCT TATTAGCGAAACATCAAGGGAAAATACAGTTCTCTTCTAGATAGGACATATATGCAATCGTGCG CTTGGCTTTCTGGTATGATTCTTGCTTTTGGTGCAAGAGTTTACCTCTCAGAACCTATGTTATT AAATCCAGAAGTACGGGAGAAAAAATGTACATATGTGGGGTTTTAATACCTGAGTATAATTTAA GAAAATTGAACAGTGACATTTCCCAAGAATTTTTACTGAACAAGATCTAAAAATCAGAATGTTT CACATCAAAATATACAAGGCCAAAAATATGTCAGAACTGGATCAAGTGGCATGATATATGGTAT GCGCACTTAAGAGACTTGTATGATCCAAGTCAACTTATAAAACAAGATCCAAACTGTAGGCCGA CTTAGATGCTTCAAAGAAACAAGCATCTTTGCATAAGCACATCAACCAAAACGGACTCTATTTC AGATATAAGAAATTTAGATTGTATAAATCATTCAAGAAAGGATAAACCCACAACAGCACGTCCT TAATTATTTTAACTGAGTTAAATCAGCAACAGGGCATTTGGTCTAGTGGTATGATTCTCGCTTA GGGTGCGAGAGGTCCCGAGTTCAATTCTCGGAATGCCCCCATTCTTTTTTAAGTCTCAGGGGCA TTCAGGAGACCTACAACCTCACACATCTAAGTAATACAGGATGTGGAGAGCATAGAGCATATCA GGACTCTATGATAAGCAAGACCATGGTGACATCCTTACGGTCACTAGTTTAGGCATTTTAACAA GGAAAAATCAAATTTTCAGACATGAAAATAAGACTTTCAAGATTGACTTCATGATCAAAGTAAC AGATAACAATATGCAAAGTTTATCCTTATCATCAGATCCACTAGCTTAGGTTCCTATAACCAAC AGCCACCTATCCCGAACCAAATCAATCCTATACTAGTTCGTCAGTTGCACCGGTGGCTTTTCAT GCACAATAAAGTCAGAGAGCAGAAATTGATTGGTATTAAGAGATCCAAAGGCAACACCATTATC TATAGTTTTAAAACTAAATTACATCAACAACAGGGCATTTGGTCTAGTGGTATGATTCTCGCTT TGGGTGCGAGAGGTCCCGAGTTCGATTCTCGGAATGCCCCCACTGACTTTTTCAATAGTCTATG TACCGTATGGCAATAATTTTTTTTATGGAAAAGTCAACCTTAGGTGCATAATTTTCAAAGATCA TTCATCTTCAACTAAACATTTGACCAGTTCCAAGAATTTCACCAGCAGTAAATTGGAACATCAT CCCAAGATTCCCAACGTACCTTTACTTTCAGGTCAAATGGTTGGGGTTTCACCAAAAAACACAC TTCTTGCAAAACGGGAGCTACCCATGTTTTCAAGGAGCTGTAGCAAAAGGAAAAAAATTGATAA CACCCAAGTTAACAAAGTTCAGCAAACACACAGAAGATAACAGTAATTGCATTTCAAAAACCGT TGCTCCAATGAATTACATCAACAACAGGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTG CGAGAGGTCCCGAGTTCGATTCTCGGAATGCCCCATCAACTAATTTTAATTATTTGTTCTAAAA CCCATAAAACGTAAGGTCAACAGAATGCATAGTTTTGTGCTTTAACTAGATTCTGAGTATGAGC TACGACGACTCAACAGATGCACACTTAAATTCTAAAGAAGCAAATTATACTGATCAGAATGTTT AACATTTCAAGTATACAAAGGCCATAAACTACACATTTTCTATCAGATCTCAGACATTAGACAA AACTTACCACATCCAATATTTGATTATGTGGTAAAGGTCCACTAGGAAAACCACATCCAAATTG TATCCTTGTCATCAGATCAACTGGCTTAGTTTCACGGAATCAAAACCACCTTCCTAGATGCAAA TCAATCAGAAATGGCTCTAAACCTATTACCTGCATCAGTGGCTCTTGAGACATTAGAACATGAA AGAGCTAAACAAAGCATCTAGAAGATGGATCTACGCAGCAGCCTTCCCTTTAGCTTTTTAACCT AATTACATCAAGAACTGGGCATCAGGTCTAGTAATATGCTTCTGGCTTATCTTTGTTTCCTAAA TACCATGGGAATCTCTTAATTCAGGTTACTTCATAACATTTATGGCATGAATATCATGTGCAGG TGTTCATATAAACAAGGTCAGAGTAATTTAATATGTTCATATAATCAGTGCAAATGGCCAACTG AAACAAAAGGTAACAAGGTATCTTGCCTTCTGATTCAAGCCTTACCAAACAACTTCAACAATCT AACCAATATACCATCAGAGTATTTCCAGCCACTAAAATTGTGAACCACAAATTCATTTTCCAAT GGTCATTCCCTGGATTCTCAGTTGTGAAACAGATCCCACAGATCAGATCTAGGGAAATTCCATT AAGACTAAAAAATTCATCACAGAAAAGTCAACTACAGGAGCTAGATCTGACAATGTCTTGATAT GTTTTTCTTTATAGCATCTATAACTCAAGTATTCAGCACCAGGGCATTTGGTCTAGTGGTATGA TTCTCGCTTCGGGTGCGAGGGGTCCCGAGTTCGATTCTCGGAATGCCCCCGATTTGTTTGACTT TTTTTTTGCATTTTGTGATAGAAAGCAAGCTCAGCAGGATGATAAGTATATTTATACTTGACTT TGCACAACCACTTTCAACAAATTTAAATATCTGAAATGTCAAATTTGTGTGATCATGCATATCA CCTAAATTGCAGTAAGGTCAAATTATCACAACGCATTGTTAAGTTTCCACTATTAAAATTTCAA AGTCAACAAATAGAACAAGATCTGAAATATACCTTTGCTCTTGCATCAGATGAATTAGATAACT TAAATCTGTTGATTTCCGATACCAGAGTCATCCAAAAAGCATGCTGAAAGACTTTCCAAGAATG AG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.344760237

Conservation Information
Conserved circRNAs	NA
PMCS	0.344760237

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							14354405-14355481(-)
						
						Potential amino acid sequence
						
							MCSLKTWVAPVLQEVCFLVKPQPFDLKVKLVLEKSASRWVVLVLLSDVFRFFWWNKLIHLMRKK
SSFLESLSACFLDDSGIGNQQI*
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						response to drought stress

Functional Information
Coding potential	Y
Potential coding position	14354405-14355481(-)
Potential amino acid sequence	MCSLKTWVAPVLQEVCFLVKPQPFDLKVKLVLEKSASRWVVLVLLSDVFRFFWWNKLIHLMRKK SSFLESLSACFLDDSGIGNQQI*
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	response to drought stress

			
						 Other Information
					
						References
						Zhang et al., 2019

circRNA

Detail information of AT2G33980_circ_g.5

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