Detail information of AT2G33980_circ_g.6


General Information
CircRNA Name AT2G33980_circ_g.6
ID in PlantcircBase ath_circ_016352
Alias At_ciR1025, AT2G33980_C4
Organism Arabidpsis thaliana
Position chr2: 14352472-14356826  JBrowse»
Reference genome TAIR10.38
Type   u-circRNA
Identification method CIRCexplorer, PcircRNA_finder, find_circ, CIRI2
Parent gene AT2G33980
Parent gene annotation nudix hydrolase homolog 22
Parent gene strand -
Alternative splicing AT2G33980_circ_g.1 AT2G33980_circ_g.2 AT2G33980_circ_g.3 AT2G33980_circ_g.4 AT2G33980_circ_g.5 AT2G33980_circ_g.7 AT2G33980_circ_g.8 AT2G33980_circ_g.9 AT2G33980_circ_g.10 AT2G33980_circ_g.11 AT2G33980_circ_g.12 AT2G33980_circ_g.13 AT2G33980_circ_g.14
Support reads 6/4
Tissues leaf/root, whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G33980.2:2
AT2G33980.1:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACATCACCACAACATACCTTGTCTTTCAGCACAAACGATTGAGATATGCACAAACACGATCATC
TTGATGATATTCCAACTAGATAACGCAAGCAGTATGcttttctttcgcatcagatgtattaatt
tgttccaccagaaaaaccggaaaacatcagaaagcagcacaagcactacccacctgctggcaga
tttttcaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 617
Transcript exons: 14352472-14352578,14353899-14353980,14354399-14354645,14
355448-14355545,14356744-14356826
CTTTTCTTTCGCATCAGATGTATTAATTTGTTCCACCAGAAAAACCGGAAAACATCAGAAAGCA
GCACAAGCACTACCCACCTGCTGGCAGATTTTTCAAGAACGAGCTTTACTTTCAGGTCAAATGG
TTGGGGTTTCACCAAAAAACACACTTCTTGCAAAACGGGAGCTACCCATGTTTTCAAGGAGCAC
ATCCAATATTTGATTATGTGGTAAAGGTCCACTAGGAAAACCACATCCAAATTGTATCCTTGTC
ATCAGATCAACTGGCTTAGTTTCACGGAATCAAAACCACCTTCCTAGATGCAAATCAATCAGAA
ATGGCTCTAAACCTATTACCTGCATCAGTGGCTCTTGAGACATTAGAACATGAAAGAGCTAAAC
AAAGCATCTAGAAGATGGATCTACGCAGCAGCCTTCCCTTTAGCTTTTTAACCTTTGCTCTTGC
ATCAGATGAATTAGATAACTTAAATCTGTTGATTTCCGATACCAGAGTCATCCAAAAAGCATGC
TGAAAGACTTTCCAAGAATGAGCTTGTCTTTCAGCACAAACGATTGAGATATGCACAAACACGA
TCATCTTGATGATATTCCAACTAGATAACGCAAGCAGTATG

Genomic sequence CTTTTCTTTCGCATCAGATGTATTAATTTGTTCCACCAGAAAAACCGGAAAACATCAGAAAGCA
GCACAAGCACTACCCACCTGCTGGCAGATTTTTCAAGAACGAGCTGCGACAATAACAAAAAGCT
TATTAGCGAAACATCAAGGGAAAATACAGTTCTCTTCTAGATAGGACATATATGCAATCGTGCG
CTTGGCTTTCTGGTATGATTCTTGCTTTTGGTGCAAGAGTTTACCTCTCAGAACCTATGTTATT
AAATCCAGAAGTACGGGAGAAAAAATGTACATATGTGGGGTTTTAATACCTGAGTATAATTTAA
GAAAATTGAACAGTGACATTTCCCAAGAATTTTTACTGAACAAGATCTAAAAATCAGAATGTTT
CACATCAAAATATACAAGGCCAAAAATATGTCAGAACTGGATCAAGTGGCATGATATATGGTAT
GCGCACTTAAGAGACTTGTATGATCCAAGTCAACTTATAAAACAAGATCCAAACTGTAGGCCGA
CTTAGATGCTTCAAAGAAACAAGCATCTTTGCATAAGCACATCAACCAAAACGGACTCTATTTC
AGATATAAGAAATTTAGATTGTATAAATCATTCAAGAAAGGATAAACCCACAACAGCACGTCCT
TAATTATTTTAACTGAGTTAAATCAGCAACAGGGCATTTGGTCTAGTGGTATGATTCTCGCTTA
GGGTGCGAGAGGTCCCGAGTTCAATTCTCGGAATGCCCCCATTCTTTTTTAAGTCTCAGGGGCA
TTCAGGAGACCTACAACCTCACACATCTAAGTAATACAGGATGTGGAGAGCATAGAGCATATCA
GGACTCTATGATAAGCAAGACCATGGTGACATCCTTACGGTCACTAGTTTAGGCATTTTAACAA
GGAAAAATCAAATTTTCAGACATGAAAATAAGACTTTCAAGATTGACTTCATGATCAAAGTAAC
AGATAACAATATGCAAAGTTTATCCTTATCATCAGATCCACTAGCTTAGGTTCCTATAACCAAC
AGCCACCTATCCCGAACCAAATCAATCCTATACTAGTTCGTCAGTTGCACCGGTGGCTTTTCAT
GCACAATAAAGTCAGAGAGCAGAAATTGATTGGTATTAAGAGATCCAAAGGCAACACCATTATC
TATAGTTTTAAAACTAAATTACATCAACAACAGGGCATTTGGTCTAGTGGTATGATTCTCGCTT
TGGGTGCGAGAGGTCCCGAGTTCGATTCTCGGAATGCCCCCACTGACTTTTTCAATAGTCTATG
TACCGTATGGCAATAATTTTTTTTATGGAAAAGTCAACCTTAGGTGCATAATTTTCAAAGATCA
TTCATCTTCAACTAAACATTTGACCAGTTCCAAGAATTTCACCAGCAGTAAATTGGAACATCAT
CCCAAGATTCCCAACGTACCTTTACTTTCAGGTCAAATGGTTGGGGTTTCACCAAAAAACACAC
TTCTTGCAAAACGGGAGCTACCCATGTTTTCAAGGAGCTGTAGCAAAAGGAAAAAAATTGATAA
CACCCAAGTTAACAAAGTTCAGCAAACACACAGAAGATAACAGTAATTGCATTTCAAAAACCGT
TGCTCCAATGAATTACATCAACAACAGGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTG
CGAGAGGTCCCGAGTTCGATTCTCGGAATGCCCCATCAACTAATTTTAATTATTTGTTCTAAAA
CCCATAAAACGTAAGGTCAACAGAATGCATAGTTTTGTGCTTTAACTAGATTCTGAGTATGAGC
TACGACGACTCAACAGATGCACACTTAAATTCTAAAGAAGCAAATTATACTGATCAGAATGTTT
AACATTTCAAGTATACAAAGGCCATAAACTACACATTTTCTATCAGATCTCAGACATTAGACAA
AACTTACCACATCCAATATTTGATTATGTGGTAAAGGTCCACTAGGAAAACCACATCCAAATTG
TATCCTTGTCATCAGATCAACTGGCTTAGTTTCACGGAATCAAAACCACCTTCCTAGATGCAAA
TCAATCAGAAATGGCTCTAAACCTATTACCTGCATCAGTGGCTCTTGAGACATTAGAACATGAA
AGAGCTAAACAAAGCATCTAGAAGATGGATCTACGCAGCAGCCTTCCCTTTAGCTTTTTAACCT
AATTACATCAAGAACTGGGCATCAGGTCTAGTAATATGCTTCTGGCTTATCTTTGTTTCCTAAA
TACCATGGGAATCTCTTAATTCAGGTTACTTCATAACATTTATGGCATGAATATCATGTGCAGG
TGTTCATATAAACAAGGTCAGAGTAATTTAATATGTTCATATAATCAGTGCAAATGGCCAACTG
AAACAAAAGGTAACAAGGTATCTTGCCTTCTGATTCAAGCCTTACCAAACAACTTCAACAATCT
AACCAATATACCATCAGAGTATTTCCAGCCACTAAAATTGTGAACCACAAATTCATTTTCCAAT
GGTCATTCCCTGGATTCTCAGTTGTGAAACAGATCCCACAGATCAGATCTAGGGAAATTCCATT
AAGACTAAAAAATTCATCACAGAAAAGTCAACTACAGGAGCTAGATCTGACAATGTCTTGATAT
GTTTTTCTTTATAGCATCTATAACTCAAGTATTCAGCACCAGGGCATTTGGTCTAGTGGTATGA
TTCTCGCTTCGGGTGCGAGGGGTCCCGAGTTCGATTCTCGGAATGCCCCCGATTTGTTTGACTT
TTTTTTTGCATTTTGTGATAGAAAGCAAGCTCAGCAGGATGATAAGTATATTTATACTTGACTT
TGCACAACCACTTTCAACAAATTTAAATATCTGAAATGTCAAATTTGTGTGATCATGCATATCA
CCTAAATTGCAGTAAGGTCAAATTATCACAACGCATTGTTAAGTTTCCACTATTAAAATTTCAA
AGTCAACAAATAGAACAAGATCTGAAATATACCTTTGCTCTTGCATCAGATGAATTAGATAACT
TAAATCTGTTGATTTCCGATACCAGAGTCATCCAAAAAGCATGCTGAAAGACTTTCCAAGAATG
AGCTGCACCAAAAAGAAGAGGGTCGTTATCAAACTTCCAGCTAAAGATCAACAGAAACTATAGC
TCTCTTTGACCATAAGATAGACGAGCAAACAAATGCTTTAACAGAAATCACTTTTTATTTGGGC
TGTTGATATGGCAGCATGGCTCTCACTTTGGGTGTGAGAGTCTATCTAACAAACATAATGTTTT
TGATCAGTCCATAACTTCGTCAGTCGAACAGCGAGAAATCAAATTTTAGACATGGATCTGATGG
CATGATACCACATCCATGCATATAAGAGATTCTTATGATTTAGTTTTTATCAGATGAACTAAAA
ACAAGATCCATACTGTACCCTTAGATTCAGATGCGTTGGCTTAAATTATCATAACCAACCTGAA
AGGATTCTAATCATCACCTACAATAGTAAAGCTTCAGCAAATTGAGGGTTCAAACCAGCATTTC
TAAGAAATGATGAAATCTTAGCAGCATGCCCTTAGGCGTTTTAACTGAGTTAAATCAGCAACAG
GGCATTTGGTCTAGTGGTATGATTCTCGCTTAGGGTGCGAGAGGTCCCGAGTTCAATTCTCGGA
ATGCCCCATTGAGTTTTTTTAAAAGAACGTGTTCTGTATACGAGCTAATAATTAAGGTAATGAT
TACATGTCTTTTGACCAAGAACTGATTAACATGCATTTCACTTAAAATTCATCAAGAACAGATT
AAAGAAAATGCCCTGTTTGATAGTGAACACTTACAATTATTGTGTGTTAACAAAATGATAAGGA
GAGATTAAATTTCAGACACAAGACATGAAATGAGACACTCATATTGACTAAATGATAAGTAACC
AATACAAAAAGATGCAAAGTGAATCGTTTTCTTAAGATCCGCACGCTTAGGTTTCTAGAACCAA
AAACCAAATCAATCCTGAAATGGTTCTAGTTCCACCTATTGCAAACGGCCCTTAAGTGTTTAAT
CTGAATTATCAACAGTTGGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTC
CCGAGTTCGATTCTCGGAATGCCCCGTTGACTTTTTAACAGTGTATTTACTGAGTGCCTATTGA
TTTATATTAGAGACTTTCCTGTCTTTTGGTGCCAAATTTTCAAAATCACGTTTTAGACAACATT
TCCCTAATTTTTCTCCAGCTGTATATTAAAAACATCACCACAACATACCTTGTCTTTCAGCACA
AACGATTGAGATATGCACAAACACGATCATCTTGATGATATTCCAACTAGATAACGCAAGCAGT
ATG
Conservation Information
Conserved circRNAs NA
PMCS 0.280328369
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description response to drought stress