Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT4G25680_circ_g.1 |
ID in PlantcircBase | ath_circ_032799 |
Alias | At_ciR5935 |
Organism | Arabidpsis thaliana |
Position | chr4: 13089158-13089576 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | AT4G25680 |
Parent gene annotation |
At4g25680 |
Parent gene strand | + |
Alternative splicing | 4_circ_ag.2 4_circ_ag.3 4_circ_ag.4 |
Support reads | 2 |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT4G25680.1:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.212423706 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
13089239-13089573(+) |
Potential amino acid sequence |
MYTYREKIVLGKTDCTIFMVNQMLRELSREWPGHTYDLLSKNCNHFCDVLCDRLGVPKIPGWVN RFANAGDTALEVAGNTAMRVYGNDEWSYGYCELGTGVFSCPSGKNPMYTYREKIVLGKTDCTIF MVNQMLRELSREWPGHTYDLLSKNCNHFCDVLCDRLGVPKIPGWVNRFANAGDTALEVAGNTAM RVYGNDEWSYGYCELGTGVFSCPSGKNPMYTYREKIVLGKTDCTIFMVNQMLRELSREWPGHTY DLLSKNCNHFCDVLCDRLGVPKIPGWVNRFANAGDTALEVAGNTAMRVYGNDEWSYGYCELGTG VFSCPSGKNPMYTYREKIVLGKTDCTIFMVNQMLRELSREWPGHTYDLLSKNCNHFCDVLCDRL GVPKIPGWVNRFANAGDTALEVAGNTAMR(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015 |