Detail information of 4_circ_ag.4


General Information
CircRNA Name 4_circ_ag.4
ID in PlantcircBase ath_circ_032798
Alias At_ciR529
Organism Arabidpsis thaliana
Position chr4: 13084687-13089576  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 4_circ_ag.2 4_circ_ag.3 AT4G25680_circ_g.1
Support reads 7/33
Tissues leaf/root, leaf, aerial, inflorescences, seed, whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATGTGACGGCTTGGGTTCTGTCTCTTAACAGGTTGGGTTAATCGCTTTGCTAATGCTGGGGAC
ACAGCCTTGGAAGTGGCAGGAAACACAGCAATGCGGgtaaagcaagccaaaactgaacttgttt
cagccagtaaagtggcttatcgcttcctttcgaatgttacctcaaacataaccaatggttcaaa
tggctcca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTAAAGCAAGCCAAAACTGAACTTGTTTCAGCCAGTAAAGTGGCTTATCGCTTCCTTTCGAATG
TTACCTCAAACATAACCAATGGTTCAAATGGCTCCAGTGGCTCTCCACAGCGGCCAGGAACTCT
CAACAATTCAGACAATGGGAGCTTTAGATTGCAAGGTAGTTGGTTGAAAGGTATACTTAACACT
GCCAAACCCTCCACAAGTACAGAGATAGGGAACAAAGAGGAAGATACAAATCATACAATCACCA
ATCAGAAAAAGCAGAACCGTGACTCTGATGTTCTACTATTTCAGTAGCAACTGTACTGATCCAC
CCCAATGTATTCACTTACTGTATATCCACCTATCCAAAATTTATTCGTTTGTATCCATTACTTT
GTATCACGATTCGAACACACCTCTCTTTTTTTTTCCCCTTTTCACAGCAGAACGTGTGATTTTG
TTAAGAAGATATTTTCAACACGTTACTGGCAAAGACCAAGCAAGTCTTAGCATATGCATTGCAC
ACCTATTAGAGGGTTTGTTAAAAGAATGTGATATAAGATAAGCAACAATGCAGTATGAAGAGAC
TTCAACATGTATAATAGATACAACTCAAAATGCGTCTTTAATATTACAGCGAACGAAAACAGAG
TATAAGGTCTAACGTCAAGAGAAAAAAACAGAGCATTGACACCAAAGCAAGCAGAAGGCAAATG
TTTATTTTAAAAACCGAATGAGGACGAGTCGTGGCATCTGTCATCCCCGGAACATCCCATTGAA
CACAAAGGCGTTCCCATCAGCATTTTCAGATATCTGTAGCGCCGAGACAGCCTGAGCAGCAATC
AAATCAGCTGATATTCCCATGTTGTTATCCCAAGCACCCCTCCTCGTGAATGGCGACCAGTTAC
TATCTCCTAGTCCATAGCCATTTGACACAAACCCAATCCCTTGAACCGCATAGCTAGCACAGCT
TTGGCGAGGAACGTAGTTAGTTCTTTCATCTCTAAACAGATCCATTGTGAAACCCTTTTCTTCA
CCAAACTTGACTCGAGATGAATCATCAGAATCTTCGCCCAGTAGGACGTGCAGAGCAACAGCTT
CTGCAATTGCAGCTCCTTCTTCATCTAACCTTTGTTGTTCTTCCAATCTCTTCTGCTTCTTCTT
TTCAAGCTCAGCCCGGATGGCTGCAGAAGTAGCAAGAGCTTTCTCCAAACGTCTCTTTTTCTTC
TCAGCTTGTTTGATACGATCAAATTCATCTTTACCATGCTTCTTCTTCGCTTTCCTAACGACTG
GCTGAACTTGCTTGCACACCGTGTGATCCATTATTGCTTGACTATAAATTTCTAACTAAAAAAC
TGCACTAAACTCGATGATGTTGTAGAGGAACTCAAGAACTACACCCACTCTGGTATATAGGAAT
ACCTCATGGTGCGGACAATACAATCCCAGAAAGAAACAACAGGAGACAACTGAAGAGAGAGGTT
ATAAGAATTCGCAGACTTATTCTTCGAAATCATTCGTCCAACATTCCCGCACCCCTTAGACTCG
CCCATTTTCTGCATTGACAATTACTTGATTAGTTTCAAGTTGCAGAGGAGTAGTAACACAGAAA
TCCATAACATCAAAATCTGAAAGCCAAAACAATAGCATTCAAACTTGTAAAAGCTAACAGTTGT
AGATAGACCACCAACCAAGCAGACACAATTGTTCTAATGACCTCGAAAGACACCAAAAGTCCTA
AAGAAGTCAAACAAAATCAGCCACCAATTAGATTGAAGATAGTCAACAACAGCCAAAGAGTAAA
ACCTAATGATTACTCAAACCCTAATTTCCCAGAGTAGGAGCAAAGTTGAAGAATACAAAGGGTA
TCCATCCATCCACAGAAAGAGTTAATTCCACGGCAAATTTCAGGATCTCTCTTAATCCTCAGCT
AATAACTCAATTAAGACTAATGGATACAAATTACACAAATACAGACACCAGATCTGCCGCAGAA
ACTAATTTTCAGATCAAAATTAACCTCAATTCAACAAGAACAATAAGAGAAACAATCGGATTTA
ATCCATTATGTAGGTCTAAGATCCATGAATAAGCATAAGATCCGAGGAAGCTAATCAAAAAGAC
TTTTAACGAAATAAGTCAATTATATTGAAAAGATAAAGGGAAATTGAAGATAAACGGAGAAACA
AAGATGATGATGAAATTTAGATCCAAACCTCGGCAATATGGCATAGAAGCAGCTGCCTTCAAAG
AACTCCTTTAAATTAATCGGATAATACAGAGAGATAAACAAAAACGCAGAAGTAAAGTTGCTGT
TTTGATGCAGAGAGAAAGAGAGAGGAATTTCGAGAGATAAAAAAGAAGAGCAGACGAAGAAGAC
GAGAGAGAGAGGATAATAGAAGGAATTATAACTAGTACAGAGAAAGAAACGCAGCGCGACTTCT
AATGAAATGGGGACACGTGTCGAATGATGTCTGACTTTTTTTTCAAGTGTAAGTTTTCAATTGG
GACTTTGGAGACTTGGCCGGTGCGACTTCGTCTACTCCCAGTATTTTGTGGGTCCTAATGAGGG
CTATTAGCAGCCGTTAGATCCCCCGATAACTGTTTTGAGATGTTTCCGGTTCCAACTTTTTTTT
TTGTCGACTTCCGGTTCCAACTTTGCAATATTTATCATGTAAGAAAGAAAATTTGAGCCTTTCA
CGAATATGTACAAGTGTCATGTTACCTTACATTACAATAAAATATAAGAGCTTAATTTGCATTC
AAAGTTTATCAACTTGACTAAGCTTTGTTTGTGCTTTGAGCATCCCATTCAAGATTCATCCACC
AAAATGAGACTTTGAATACACTTTTGATATAACAAAAAACTTGGTCGAATTTCTTTGGTCCTAA
TTTATTTCCTGAATCCCATCTGTTGTACTGGGCCTAGGCCCAATTGGCCCAATATGTATGTACC
ATAAAAAAGAAGTCATTAAGTTTTTATGATTGACTTTTTTACATAGAAGCAAAATTATAAATTT
GGTGTATGAATGGATGGACTAATTCGAGACGAATCAGATGGCTAACGAAAACCAGACTTGTGTC
CGTTTTGCATTTTCGAAAATTATCGGAAGAATCGGTCAATTGATTACCCTCTTTTTTTTTTGTT
TACCCCATTTTTTAATAGTCATGAATCATCTTCCTTGGTTGTGTCAGATTACTTAAGTCATTAT
TTTGTTATAGAGATGCTTTACTAGTATTTTTGATTTGTTTTGGTAAGGACACTTGTCTAGCTAA
AGAAATGTTAGTTAAATGAAAGAAAAAAGGTTCAGTAGTTGACCCGTTTAATCAACTGCGAACA
ACGTTCATACTAATATAATTTGTTACCATAAATTCATAATCTAAACGCGTGCTTAAGTTGTAAA
CAAAAGGAATTAACAAGGGACACGTAAAGTAGCAATTCCGCAGGAAAAGCGAGGGTAAAATTGT
CATTTCAGTGGATCCCCACCACCACCACCACCGCCGCACCAGTTTCTTCTTCATCTCCTACGTC
TGAAATTGAGAAATCGGAAGAAGAAAGATAAGTCTAATCTTGTGCCTTTAGATTTCTTTTCGGG
GAGATCTAGTAGTTGTTGGATTCGTTAAACGGAGAAGTGGATTTGGTACGAGTCTTTAGGTTTC
CTTCTTCACCAAAAGCTCTATATAGAGAGAATCTGCGAGCTCTTTTTGGTAGGAAATTAGGGTT
CGTGTTGCTTGGTAAATATAGAATCAATGACGGAGGTTGTTCTGCATATATACGATGTGACGAA
CAGTGGATCGGAGAAGACTAACAACACCATTGTTCAGATCAATAGGTTCTTCAAAGACGGGATC
GGTCTTGGCGGTATATTCCACAGCGCTATTCAGGTACTACTCTTCGTCTATATTCTATGAATCT
ACATTTATGTACAATTATCGATGATGTCTAAGCTTGGTTTTGGTCTACTTTATGTAGATTTGGT
TTTTGTTTCTGTGTATGTATGTGGAAATTAAGAAGTTGACGGCATGATACTTTTCTTTTGATAT
GTGAGGCTTTAGTTTAATGGTTTATGGTCCTAAAGGTCTGGAGCTGAAGTCTCTCTTTTGCTCA
GGATCTTGTGTTTCCTAGTACTTTTGGTAACTTTCCATATGATAATGATTGCGATATATTGACC
AAGTGCTCTCTGGAGACTTGTTAAATCCAATGATGGCTTACGTTTACTTCTGTGATCTTTGACC
TGGGCAAATATAATTGCATATACCACTTTCCCATTTGAGTCGTGACAATTTGGTGTATTCCAAC
AAAACTACCAGAATTTAGGTTTTCAAGTTAGTGCTAATCATTCTATGTTCTTAGGTCTGTATAT
CTATGCAATATCATTTGATTATTCTTGTTCATGGTTTTGTTATTTTTTTGTGTCTTGTAGATGA
CTATTGATTCGCAGGGAAGAGTGATTGAATAGAATATTTTATGACCTTTGTGCAGGTATATGGA
AACGATGAATGGTCTTACGGGTATTGTGAACTAGGAACTGGTGTATTCAGCTGCCCGAGTGGAA
AGAATCCAATGTACACATACCGTGAGAAAATCGTCCTTGGCAAAACAGATTGCACAATCTTCAT
GGTGAATCAGATGTTGCGTGAACTCAGCAGGGAATGGCCTGGACACACTTATGATTTGTTGTCA
AAAAATTGCAATCACTTCTGCGATGTACTCTGTGACCGGCTTGGTGTGCCAAAGATCCCAGGTA
AAGCCATTTTTTGGGAATCTGGTGTGTGTGTGTGTGTGTTTTGTCTTCAAGGCTTATGTGACGG
CTTGGGTTCTGTCTCTTAACAGGTTGGGTTAATCGCTTTGCTAATGCTGGGGACACAGCCTTGG
AAGTGGCAGGAAACACAGCAATGCGG
Conservation Information
Conserved circRNAs NA
PMCS 0.711592357
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs ath-miR5021
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017