Detail information of 4_circ_ag.3


General Information
CircRNA Name 4_circ_ag.3
ID in PlantcircBase ath_circ_032797
Alias NA
Organism Arabidpsis thaliana
Position chr4: 13084523-13089419  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 4_circ_ag.2 4_circ_ag.4 AT4G25680_circ_g.1
Support reads 12
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGCAGGGAATGGCCTGGACACACTTATGATTTGTTGTCAAAAAATTGCAATCACTTCTGCGATG
TACTCTGTGACCGGCTTGGTGTGCCAAAGATCCCAGgttgggtgaatcgttttgctcatgctgg
cgacacagccttggaagtagcaggaaacacagcaatgcgggtgggttctctctcattttgctct
gcccacgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTGGGTGAATCGTTTTGCTCATGCTGGCGACACAGCCTTGGAAGTAGCAGGAAACACAGCAAT
GCGGGTGGGTTCTCTCTCATTTTGCTCTGCCCACGCTGTTTCTTTTTTTACACCTGAATGCATG
TGGATGTTAAGTCCTTGTGAACTGTGACTTTTGCAGGTAAAGCAAGCCAAAACTGAACTTGTTT
CAGCCAGTAAAGTGGCTTATCGCTTCCTTTCGAATGTTACCTCAAACATAACCAATGGTTCAAA
TGGCTCCAGTGGCTCTCCACAGCGGCCAGGAACTCTCAACAATTCAGACAATGGGAGCTTTAGA
TTGCAAGGTAGTTGGTTGAAAGGTATACTTAACACTGCCAAACCCTCCACAAGTACAGAGATAG
GGAACAAAGAGGAAGATACAAATCATACAATCACCAATCAGAAAAAGCAGAACCGTGACTCTGA
TGTTCTACTATTTCAGTAGCAACTGTACTGATCCACCCCAATGTATTCACTTACTGTATATCCA
CCTATCCAAAATTTATTCGTTTGTATCCATTACTTTGTATCACGATTCGAACACACCTCTCTTT
TTTTTTCCCCTTTTCACAGCAGAACGTGTGATTTTGTTAAGAAGATATTTTCAACACGTTACTG
GCAAAGACCAAGCAAGTCTTAGCATATGCATTGCACACCTATTAGAGGGTTTGTTAAAAGAATG
TGATATAAGATAAGCAACAATGCAGTATGAAGAGACTTCAACATGTATAATAGATACAACTCAA
AATGCGTCTTTAATATTACAGCGAACGAAAACAGAGTATAAGGTCTAACGTCAAGAGAAAAAAA
CAGAGCATTGACACCAAAGCAAGCAGAAGGCAAATGTTTATTTTAAAAACCGAATGAGGACGAG
TCGTGGCATCTGTCATCCCCGGAACATCCCATTGAACACAAAGGCGTTCCCATCAGCATTTTCA
GATATCTGTAGCGCCGAGACAGCCTGAGCAGCAATCAAATCAGCTGATATTCCCATGTTGTTAT
CCCAAGCACCCCTCCTCGTGAATGGCGACCAGTTACTATCTCCTAGTCCATAGCCATTTGACAC
AAACCCAATCCCTTGAACCGCATAGCTAGCACAGCTTTGGCGAGGAACGTAGTTAGTTCTTTCA
TCTCTAAACAGATCCATTGTGAAACCCTTTTCTTCACCAAACTTGACTCGAGATGAATCATCAG
AATCTTCGCCCAGTAGGACGTGCAGAGCAACAGCTTCTGCAATTGCAGCTCCTTCTTCATCTAA
CCTTTGTTGTTCTTCCAATCTCTTCTGCTTCTTCTTTTCAAGCTCAGCCCGGATGGCTGCAGAA
GTAGCAAGAGCTTTCTCCAAACGTCTCTTTTTCTTCTCAGCTTGTTTGATACGATCAAATTCAT
CTTTACCATGCTTCTTCTTCGCTTTCCTAACGACTGGCTGAACTTGCTTGCACACCGTGTGATC
CATTATTGCTTGACTATAAATTTCTAACTAAAAAACTGCACTAAACTCGATGATGTTGTAGAGG
AACTCAAGAACTACACCCACTCTGGTATATAGGAATACCTCATGGTGCGGACAATACAATCCCA
GAAAGAAACAACAGGAGACAACTGAAGAGAGAGGTTATAAGAATTCGCAGACTTATTCTTCGAA
ATCATTCGTCCAACATTCCCGCACCCCTTAGACTCGCCCATTTTCTGCATTGACAATTACTTGA
TTAGTTTCAAGTTGCAGAGGAGTAGTAACACAGAAATCCATAACATCAAAATCTGAAAGCCAAA
ACAATAGCATTCAAACTTGTAAAAGCTAACAGTTGTAGATAGACCACCAACCAAGCAGACACAA
TTGTTCTAATGACCTCGAAAGACACCAAAAGTCCTAAAGAAGTCAAACAAAATCAGCCACCAAT
TAGATTGAAGATAGTCAACAACAGCCAAAGAGTAAAACCTAATGATTACTCAAACCCTAATTTC
CCAGAGTAGGAGCAAAGTTGAAGAATACAAAGGGTATCCATCCATCCACAGAAAGAGTTAATTC
CACGGCAAATTTCAGGATCTCTCTTAATCCTCAGCTAATAACTCAATTAAGACTAATGGATACA
AATTACACAAATACAGACACCAGATCTGCCGCAGAAACTAATTTTCAGATCAAAATTAACCTCA
ATTCAACAAGAACAATAAGAGAAACAATCGGATTTAATCCATTATGTAGGTCTAAGATCCATGA
ATAAGCATAAGATCCGAGGAAGCTAATCAAAAAGACTTTTAACGAAATAAGTCAATTATATTGA
AAAGATAAAGGGAAATTGAAGATAAACGGAGAAACAAAGATGATGATGAAATTTAGATCCAAAC
CTCGGCAATATGGCATAGAAGCAGCTGCCTTCAAAGAACTCCTTTAAATTAATCGGATAATACA
GAGAGATAAACAAAAACGCAGAAGTAAAGTTGCTGTTTTGATGCAGAGAGAAAGAGAGAGGAAT
TTCGAGAGATAAAAAAGAAGAGCAGACGAAGAAGACGAGAGAGAGAGGATAATAGAAGGAATTA
TAACTAGTACAGAGAAAGAAACGCAGCGCGACTTCTAATGAAATGGGGACACGTGTCGAATGAT
GTCTGACTTTTTTTTCAAGTGTAAGTTTTCAATTGGGACTTTGGAGACTTGGCCGGTGCGACTT
CGTCTACTCCCAGTATTTTGTGGGTCCTAATGAGGGCTATTAGCAGCCGTTAGATCCCCCGATA
ACTGTTTTGAGATGTTTCCGGTTCCAACTTTTTTTTTTGTCGACTTCCGGTTCCAACTTTGCAA
TATTTATCATGTAAGAAAGAAAATTTGAGCCTTTCACGAATATGTACAAGTGTCATGTTACCTT
ACATTACAATAAAATATAAGAGCTTAATTTGCATTCAAAGTTTATCAACTTGACTAAGCTTTGT
TTGTGCTTTGAGCATCCCATTCAAGATTCATCCACCAAAATGAGACTTTGAATACACTTTTGAT
ATAACAAAAAACTTGGTCGAATTTCTTTGGTCCTAATTTATTTCCTGAATCCCATCTGTTGTAC
TGGGCCTAGGCCCAATTGGCCCAATATGTATGTACCATAAAAAAGAAGTCATTAAGTTTTTATG
ATTGACTTTTTTACATAGAAGCAAAATTATAAATTTGGTGTATGAATGGATGGACTAATTCGAG
ACGAATCAGATGGCTAACGAAAACCAGACTTGTGTCCGTTTTGCATTTTCGAAAATTATCGGAA
GAATCGGTCAATTGATTACCCTCTTTTTTTTTTGTTTACCCCATTTTTTAATAGTCATGAATCA
TCTTCCTTGGTTGTGTCAGATTACTTAAGTCATTATTTTGTTATAGAGATGCTTTACTAGTATT
TTTGATTTGTTTTGGTAAGGACACTTGTCTAGCTAAAGAAATGTTAGTTAAATGAAAGAAAAAA
GGTTCAGTAGTTGACCCGTTTAATCAACTGCGAACAACGTTCATACTAATATAATTTGTTACCA
TAAATTCATAATCTAAACGCGTGCTTAAGTTGTAAACAAAAGGAATTAACAAGGGACACGTAAA
GTAGCAATTCCGCAGGAAAAGCGAGGGTAAAATTGTCATTTCAGTGGATCCCCACCACCACCAC
CACCGCCGCACCAGTTTCTTCTTCATCTCCTACGTCTGAAATTGAGAAATCGGAAGAAGAAAGA
TAAGTCTAATCTTGTGCCTTTAGATTTCTTTTCGGGGAGATCTAGTAGTTGTTGGATTCGTTAA
ACGGAGAAGTGGATTTGGTACGAGTCTTTAGGTTTCCTTCTTCACCAAAAGCTCTATATAGAGA
GAATCTGCGAGCTCTTTTTGGTAGGAAATTAGGGTTCGTGTTGCTTGGTAAATATAGAATCAAT
GACGGAGGTTGTTCTGCATATATACGATGTGACGAACAGTGGATCGGAGAAGACTAACAACACC
ATTGTTCAGATCAATAGGTTCTTCAAAGACGGGATCGGTCTTGGCGGTATATTCCACAGCGCTA
TTCAGGTACTACTCTTCGTCTATATTCTATGAATCTACATTTATGTACAATTATCGATGATGTC
TAAGCTTGGTTTTGGTCTACTTTATGTAGATTTGGTTTTTGTTTCTGTGTATGTATGTGGAAAT
TAAGAAGTTGACGGCATGATACTTTTCTTTTGATATGTGAGGCTTTAGTTTAATGGTTTATGGT
CCTAAAGGTCTGGAGCTGAAGTCTCTCTTTTGCTCAGGATCTTGTGTTTCCTAGTACTTTTGGT
AACTTTCCATATGATAATGATTGCGATATATTGACCAAGTGCTCTCTGGAGACTTGTTAAATCC
AATGATGGCTTACGTTTACTTCTGTGATCTTTGACCTGGGCAAATATAATTGCATATACCACTT
TCCCATTTGAGTCGTGACAATTTGGTGTATTCCAACAAAACTACCAGAATTTAGGTTTTCAAGT
TAGTGCTAATCATTCTATGTTCTTAGGTCTGTATATCTATGCAATATCATTTGATTATTCTTGT
TCATGGTTTTGTTATTTTTTTGTGTCTTGTAGATGACTATTGATTCGCAGGGAAGAGTGATTGA
ATAGAATATTTTATGACCTTTGTGCAGGTATATGGAAACGATGAATGGTCTTACGGGTATTGTG
AACTAGGAACTGGTGTATTCAGCTGCCCGAGTGGAAAGAATCCAATGTACACATACCGTGAGAA
AATCGTCCTTGGCAAAACAGATTGCACAATCTTCATGGTGAATCAGATGTTGCGTGAACTCAGC
AGGGAATGGCCTGGACACACTTATGATTTGTTGTCAAAAAATTGCAATCACTTCTGCGATGTAC
TCTGTGACCGGCTTGGTGTGCCAAAGATCCCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.432611604
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs ath-miR5021
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017