Detail information of Os04g0376500_circ_g.4


General Information
CircRNA Name Os04g0376500_circ_g.4
ID in PlantcircBase osa_circ_023549
Alias NA
Organism Oryza sativa
Position chr4: 18402332-18403387  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0376500
Parent gene annotation Similar to Eukaryotic translation initiation factor 3 subunit 3
(eIF-3 gamma) (eIF3 p38 subunit) (eIF3h). (Os04t0376500-01);Simi
lar to eukaryotic translation initiation factor 3 subunit 3. (Os
04t0376500-02)
Parent gene strand -
Alternative splicing Os04g0376500_circ_g.3 Os04g0376500_circ_g.5 Os04g0376500_circ_g.6
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0376500-02:5
Os04t0376500-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGATCAATTGCACCTTATTTATTTTTGCATACCTGATAGTTCATAAACGTTTCAATCAGTTCC
ACAGTCTGAAAAGATCCAAGCAAGCAAGATTGATACcttgttctgctctgatgaaagatcatcc
atgcagccaatcagaaattccaagttcctttccatgaatggagcagttgacaatttaaggcggt
caaaatca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGTTCTGCTCTGATGAAAGATCATCCATGCAGCCAATCAGAAATTCCAAGTTCCTTTCCATG
AATGGAGCAGTTGACAATTTAAGGCGGTCAAAATCACACTGTAACAAGAAGATAAATATAAATC
CTAGGTAGCTGCTAAAGGATGATGACAACAGATGCCACATAAAAAAAATTCACAAGTTAACTCT
AAACCTGTGAAACAGGTGATTCAGGTTCCAGCTCCGTCATGAAGGCACTGACAAGTGCAGAGTT
GGAAACTTTAATCTATGAGACAATAAGACAGGATACATCAGGACACAAAAATTGTACATATTGA
CATGAAAGATAACTAAGTACATACCGGTATCTCCTCAAAAATATCAACCCATGACAATTTCTTC
TCTCTTAACCTGTAAAAACATGTAGTCATTTGCATATGCAATCTTTAAAAACTATTAGAAGGAC
TGGGTTACATAAAAGAAACCGTACTTCTCTCCAGTTAAACCATTGTTACGGTAAAGATCCATGA
ATGAATCTGTGAGTTTCAAGGCCTTGAGAGCTAGAACCCCCTGATTTGACCTAGATGGGTCATA
AACGATGCACACACATCTCCGGATATTCTCCTGTAACATGCAAATGTTATGTTCTGCATGCAAC
ATCGCAGAAAATTACGCAACTCTTATGACCAACTCATAGATATTTGATATATGATATGCATGTA
CTGCTGCGTATACTACATTGGATGTACAAACAGGTTAGATATTGTAATGCATACAGAGACTTAA
CCTTGATTCGTGTCAAAATAGGTTACATGCTAATTAGAGAAGCTAATTAGGTGCACTGTTTGCT
GTCCTATTTGTTTGTTCATGCTGTGCTAGCTATTTTGAGCTAATTAATGCGCAAGTTGGCCTAA
AACTATTACTGCAGTAGGTCAACAAAGCTGGGAGAGGATAACCCAACAGCAATGGAAAGATTGA
TCAATTGCACCTTATTTATTTTTGCATACCTGATAGTTCATAAACGTTTCAATCAGTTCCACAG
TCTGAAAAGATCCAAGCAAGCAAGATTGATAC
Conservation Information
Conserved circRNAs NA
PMCS 0.194930919
Functional Information
Coding potential Y
Potential coding position 18403334-18403342(-)
18402359-18403342(-)
Potential amino acid sequence MNYQENIRRCVCIVYDPSRSNQGVLALKALKLTDSFMDLYRNNGLTGEKLREKKLSWVDIFEEI
PIKVSNSALVSAFMTELEPESPVSQCDFDRLKLSTAPFMERNLEFLIGCMDDLSSEQNKVSILL
AWIFSDCGTD*(-)
MIFHQSRTRYQSCLLGSFQTVELIETFMNYQENIRRCVCIVYDPSRSNQGVLALKALKLTDSFM
DLYRNNGLTGEKLREKKLSWVDIFEEIPIKVSNSALVSAFMTELEPESPVSQCDFDRLKLSTAP
FMERNLEFLIGCMDDLSSEQNKVSILLAWIFSDCGTD*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017