Detail information of Os04g0376500_circ_g.3


General Information
CircRNA Name Os04g0376500_circ_g.3
ID in PlantcircBase osa_circ_023548
Alias NA
Organism Oryza sativa
Position chr4: 18402173-18402599  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0376500
Parent gene annotation Similar to Eukaryotic translation initiation factor 3 subunit 3
(eIF-3 gamma) (eIF3 p38 subunit) (eIF3h). (Os04t0376500-01);Simi
lar to eukaryotic translation initiation factor 3 subunit 3. (Os
04t0376500-02)
Parent gene strand -
Alternative splicing Os04g0376500_circ_g.4 Os04g0376500_circ_g.5 Os04g0376500_circ_g.6
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0376500-01:3
Os04t0376500-02:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAAAAAATTCACAAGTTAACTCTAAACCTGTGAAACAGGTGATTCAGGTTCCAGCTCCGTCAT
GAAGGCACTGACAAGTGCAGAGTTGGAAACTTTAATcttctcttttggagccatgcctgctgct
gtgactgctgtcttgagacattgcgatagtaatattggaactacaccagaaggacaacacccag
tcatataa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCTCTTTTGGAGCCATGCCTGCTGCTGTGACTGCTGTCTTGAGACATTGCGATAGTAATATT
GGAACTACACCAGAAGGACAACACCCAGTCATATAAAATATATTTGTCACAGTAACATCAGATA
GTTTATGCAAAAGTTCATTTCAAAAAATAACCTTGTTCTGCTCTGATGAAAGATCATCCATGCA
GCCAATCAGAAATTCCAAGTTCCTTTCCATGAATGGAGCAGTTGACAATTTAAGGCGGTCAAAA
TCACACTGTAACAAGAAGATAAATATAAATCCTAGGTAGCTGCTAAAGGATGATGACAACAGAT
GCCACATAAAAAAAATTCACAAGTTAACTCTAAACCTGTGAAACAGGTGATTCAGGTTCCAGCT
CCGTCATGAAGGCACTGACAAGTGCAGAGTTGGAAACTTTAAT
Conservation Information
Conserved circRNAs NA
PMCS 0.260537198
Functional Information
Coding potential Y
Potential coding position 18402361-18402393(+)
18402565-18402562(-)
18402359-18402597(-)
18402192-18402562(-)
Potential amino acid sequence MQPIRNSKFLSMNGAVDNLRRSKSHCETGDSGSSSVMKALTSAELETLIFSFGAMPAAVTAVLR
HCDSNIGTCSALMKDHPCSQSEIPSSFP*(+)
MTELEPESPVSQCDFDRLKLSTAPFMERNLEFLIGCMDDLSSEQNKFQYYYRNVSRQQSQQQAW
LQKRRLKFPTLHLSVPS*(-)
MIFHQSRTSSNITIAMSQDSSHSSRHGSKRED*(-)
MAPKEKIKVSNSALVSAFMTELEPESPVSQCDFDRLKLSTAPFMERNLEFLIGCMDDLSSEQNK
FQYYYRNVSRQQSQQQAWLQKRRLKFPTLHLSVPS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017