Detail information of Os04g0376500_circ_g.5


General Information
CircRNA Name Os04g0376500_circ_g.5
ID in PlantcircBase osa_circ_023550
Alias Os_ciR5407
Organism Oryza sativa
Position chr4: 18402881-18403387  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os04g0376500
Parent gene annotation Similar to Eukaryotic translation initiation factor 3 subunit 3
(eIF-3 gamma) (eIF3 p38 subunit) (eIF3h). (Os04t0376500-01);Simi
lar to eukaryotic translation initiation factor 3 subunit 3. (Os
04t0376500-02)
Parent gene strand -
Alternative splicing Os04g0376500_circ_g.3 Os04g0376500_circ_g.4 Os04g0376500_circ_g.6
Support reads 3
Tissues root
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0376500-02:2
Os04t0376500-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGATCAATTGCACCTTATTTATTTTTGCATACCTGATAGTTCATAAACGTTTCAATCAGTTCC
ACAGTCTGAAAAGATCCAAGCAAGCAAGATTGATACcccctgatttgacctagatgggtcataa
acgatgcacacacatctccggatattctcctgtaacatgcaaatgttatgttctgcatgcaaca
tcgcagaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCCCTGATTTGACCTAGATGGGTCATAAACGATGCACACACATCTCCGGATATTCTCCTGTAAC
ATGCAAATGTTATGTTCTGCATGCAACATCGCAGAAAATTACGCAACTCTTATGACCAACTCAT
AGATATTTGATATATGATATGCATGTACTGCTGCGTATACTACATTGGATGTACAAACAGGTTA
GATATTGTAATGCATACAGAGACTTAACCTTGATTCGTGTCAAAATAGGTTACATGCTAATTAG
AGAAGCTAATTAGGTGCACTGTTTGCTGTCCTATTTGTTTGTTCATGCTGTGCTAGCTATTTTG
AGCTAATTAATGCGCAAGTTGGCCTAAAACTATTACTGCAGTAGGTCAACAAAGCTGGGAGAGG
ATAACCCAACAGCAATGGAAAGATTGATCAATTGCACCTTATTTATTTTTGCATACCTGATAGT
TCATAAACGTTTCAATCAGTTCCACAGTCTGAAAAGATCCAAGCAAGCAAGATTGATAC
Conservation Information
Conserved circRNAs NA
PMCS 0.13642334
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015