Detail information of Os02g0469200_circ_g.7


General Information
CircRNA Name Os02g0469200_circ_g.7
ID in PlantcircBase osa_circ_014626
Alias NA
Organism Oryza sativa
Position chr2: 15847286-15853050  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer
Parent gene Os02g0469200
Parent gene annotation Conserved hypothetical protein. (Os02t0469200-01);Similar to pre
dicted protein. (Os02t0469200-02)
Parent gene strand +
Alternative splicing Os02g0469200_circ_g.5 Os02g0469200_circ_g.6 Os02g0469200_circ_g.8 Os02g0469200_circ_g.9 Os02g0469200_circ_g.10 Os02g0469200_circ_g.11
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os02t0469200-02:6
Os02t0469200-01:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCAAATCTCTTTCAAACATGGTTGTAGTAGTTCAATCAGAAGTTGATTCTTGGGAAAGCCACTT
GCAGTGCAATGGGAGGTCAATCTTATGGGATTTGAGaagttatagaagaagaggctgaagctaa
attacaagatacaatcagagagagattctcatcttttggcgaggtatgctggatttctcttaga
atgcactg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.201528222
Functional Information
Coding potential Y
Potential coding position 15848422-15847304(+)
Potential amino acid sequence MHDLKSELEGYNTGDSDDINKKKALDALNRMEKWNLFKDVPEEHHSYTVARDSFLAHLGSVLWG
SMSHVIAPSVSHRAHHYYDKLSFQLYFVTQEKVRNMKQFPVNVKSVTEGLSSVLLQFQKPMFSQ
RMLSLSEDPALMMAFSMARRAAAVPLLLVNGTYKSTVHTYLDSAILQHQLQRLSEHNSLKGGHS
NHRSTLEIPIFWFIHSEPLLLDKHYQAKSLSNMVVVVQSEVDSWESHLQCNGRSILWDLRSYRR
RG*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017