Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os02g0469200_circ_g.7 |
ID in PlantcircBase | osa_circ_014626 |
Alias | NA |
Organism | Oryza sativa |
Position | chr2: 15847286-15853050 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | u-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os02g0469200 |
Parent gene annotation |
Conserved hypothetical protein. (Os02t0469200-01);Similar to pre dicted protein. (Os02t0469200-02) |
Parent gene strand | + |
Alternative splicing | Os02g0469200_circ_g.5 Os02g0469200_circ_g.6 Os02g0469200_circ_g.8 Os02g0469200_circ_g.9 Os02g0469200_circ_g.10 Os02g0469200_circ_g.11 |
Support reads | 1 |
Tissues | shoot |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os02t0469200-02:6 Os02t0469200-01:7 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.201528222 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
15848422-15847304(+) |
Potential amino acid sequence |
MHDLKSELEGYNTGDSDDINKKKALDALNRMEKWNLFKDVPEEHHSYTVARDSFLAHLGSVLWG SMSHVIAPSVSHRAHHYYDKLSFQLYFVTQEKVRNMKQFPVNVKSVTEGLSSVLLQFQKPMFSQ RMLSLSEDPALMMAFSMARRAAAVPLLLVNGTYKSTVHTYLDSAILQHQLQRLSEHNSLKGGHS NHRSTLEIPIFWFIHSEPLLLDKHYQAKSLSNMVVVVQSEVDSWESHLQCNGRSILWDLRSYRR RG*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |