Plant Circular RNA Database

Detail information of Os02g0829500_circ_ag.2

			
						 General Information
					
						CircRNA Name
						Os02g0829500_circ_ag.2
					
						ID in PlantcircBase
						osa_circ_017347
					
						Alias
						Os_ciR575
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 35661331-35665473  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ag-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							Os02g0829500_circ_ag.1 Os02g0829500_circ_ag.3 Os02g0829500_circ_ag.4 Os02g0829500_circ_ag.5 Os02g0829500_circ_ag.6 Os02g0829500_circ_ag.7 Os02g0829600_circ_g.1 Os02g0829600_circ_g.2 						
					
						Support reads
						158/13
					
						Tissues
						root/seed
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	Os02g0829500_circ_ag.2
ID in PlantcircBase	osa_circ_017347
Alias	Os_ciR575
Organism	Oryza sativa
Position	chr2: 35661331-35665473 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ag-circRNA
Identification method	find_circ
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	Os02g0829500_circ_ag.1 Os02g0829500_circ_ag.3 Os02g0829500_circ_ag.4 Os02g0829500_circ_ag.5 Os02g0829500_circ_ag.6 Os02g0829500_circ_ag.7 Os02g0829600_circ_g.1 Os02g0829600_circ_g.2
Support reads	158/13
Tissues	root/seed
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GGTATACTCTATCCGCAATGCTTGAATGAGCGCATACCAGGTAAAAACCACTCGAAGTCTAACT
TCAACAATTTTCTCATGCTGTCCAGTTGCAAGCTCActgattgcttgctgtacataagaaagag
atctaaatcatcagattcttctgattttgcaacatgatctccagtgaaaagcgcctttactggt
ttgtagaa

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTGATTGCTTGCTGTACATAAGAAAGAGATCTAAATCATCAGATTCTTCTGATTTTGCAACATG
ATCTCCAGTGAAAAGCGCCTTTACTGGTTTGTAGAATAAGCAGACTGAACCCTGAAAAAAATGT
TCCTTTTAATGAATGAACCCTATATATGCTGAAGAAGGTTAGATTGGTTGTCCAAATCTCAGTT
TATGAGCTTTGGACAATTTTTGACAGAACATGTTCCTTCGTCTCTAAGGTTGAGGAAAATTTGG
GACAGGATATGGTGATAATCCAATCTAATCTTTATGCGCAAAAATAGTGCACATATGACATATC
TTGACCCTAATACTCTTTGTCTTTGATGTTGTATGTTTAAGGATGTTCCATCCAATCCAGAGAA
GCCTTCCATACTGAAAGCTACAAGTAATTGCTCAAACAACTTCTTTCATTAAGTTGAACTTACT
TCAGTATGACCTGGGGTATGGATAAGTTCGAAATCAGCTCCAATGTCCCATGGGCCATTTCCAG
TAAGTTTCCACTCAACATCTGCAGTAACATCCTCTACCTGCATCAGCACAGTAATTGCAGTAAA
TATCAGGAGAAGTATCTGAGAGCAACATTCACTGGAGAAATAGGTAAATCAGACTCTACACTAT
GTTCATGTCATGCAAGCTCTGACACGATATAACTGTCCTCTCTGTACTGCTAATCAGTACTTGT
ACTGCAGGTTATAAAGTTTGACAGTGTTGATTGAGTACTCGATGAGGATCAGTCAGGACTCAGG
AATAAGCGATGTCTTTCTAGGGTCAGACAGAAGGATGATCATGATTCTTTGAAATCGTTTGGAT
GAGGGTCTTACATCGCCCGAATGGATGATCCTCTCACATTTTAGCCGCTCAGCCCACTTCCTAT
GATCCGCGACATCATCCCTGTAAGTAACTCAATAGACGCTCTTCAATATCCAAAATAAAAGGGA
GTGCGTTAAAAAAAGGCAATTAAAAAAGAGAACTATGTGATACAGCTTTAAGTCCGGAAATACA
TGTGGGTCAAAAACATGTAGCGTGCTCCACCAAGTTTTTCGATGTTCTCTGCCAGTTTCGTTGT
ATACCTTGGGCTGTAAAATCAGAAAATATCAGAAGACCTAGTGATAACCACATATAAACTGGAC
AATAAGATTTGGGAGAGATGATCTCCAATTTGTGAGGAAAAAAATGCTATCACATTGACCAGTA
CGCTGTGCTGAAATTGAATACTTATCAGCAGGAACACTAGCAATTAATGTATCTGATTACAACT
TGATAATTTTTTTTGTCTGGAGATGGAAAGATGGGTACTTAGGGACATGAACAAATTCATAAGC
TTATTGGAATTAACCTGTCAACTAGTATGTTTCCATCTGGATGGGTTAAAAGATAAGAAGTTGC
TCCATATGAATCTTGAGAATGATAGCCACAGAGGTAAACACCCTGGAAGTTTTGAGCAGTGCAA
CAAGGATGAGTATGAATATAATTTAATTGAGATAAATTGGGTGAAATCCGGAATGAGGAGAGCA
AGTGATACAGGGAGAAGATGATTGTCGATGGGGAGCGGGAACATGTTTTGCACTTGAAGAATGT
CCTTTGCAGGTTTCTCGGTGTGAATGGAGGAAGTAGGACAGGAGAGCAGAGCCTGGACATCAAT
GGCAGGCATGGTTCAATTTTGCATTGAAATTCAGTAAAAGAGAGGCAGAGCTACCTGCAGGGCC
TTGGTCCTGTGTTCGTCGGAGATGGGCTGCGCGGCGACGGCGGCTTTTCCGTCCACCCTCTTGA
ACACCTCCTGCAATTCAAATCACCATCACCAAGCAAAGCAGCTGAAGCATCAAGCATATGCATA
TATGAAAGACTAGTTACCGAAGCCATCCAGCGGCAGGTCTGGCAATCGATGCATCGGTGATCTG
CAGCAAACAAACTCAACTGAAGCGCATCAGGAAGAGAAATTAAATGGAGACCGATTTCAGGTGC
AGGGCTCGATCAGTGGCTCACCGACGAAGAAGTCGCCGGGGACGTTCTGCGGGCGGCGGCGTTG
GAGTGCCGGAGAGGACGCCGAAGAGGCAACAGCTCGTGGTCGTCGCGGCGGCGGAGCAGCGACG
GACGCTGGGGGGGCGAAGCGAAGGCTCATCATCAACGCCATGGCGGAACAGCAGCGTCAGCGAC
AGCGTGCGTGCTACAACTAGCAGCGTTCGCTCTGCGCAGGGCAGCAGATGCACAAAACGACCCT
CACGACTGACGTCACAGCAAACGCCAACATCCACCAAAGTCAGAGGATCCGTTTCCCAACATCC
TGCACGTACGGCTCGATTTTTTCCCTTTTTCTTTTCTTTCTTTTTTTTACTGAGTGCCCATTTT
AACACTCGATCAATAATAAACTACTCTAGTTCTAGTATGAAATGAGTCTGTACCCATTATAGAT
ATGTTTTTGAGATAAGTATTTGTTGATAACTTTTTGTGACAAGTAGACAAGCACGATCGCAACA
ACTAAACGCCTTGCAGTGATATGAAATCGCCAACCACCTCGATCTAGCCAAAAGGCTAAATCAA
GATGGGTTTTATAGAAAAACAGCTAAATCGGCTAGCGGAGCCGATTTAGAGATCAAAATCAGCC
TCTAGGCCGATTTAGATCGATATGAGGATAACTACCCGTCTCGTGGGCAAAACAGAAGGTTTTT
AGGACAAACCTACAAAGAGGTGTCGCACTCTTGCAGCGGCGGCGGACGGTTTACGGCGCAAACC
GACAAAGATGGACTAAACTAGGGTAAAATAGAAAACATAGTAAAAGAACGATTCAAGTAGATTG
TATTCAGGGTATTACAATGAATCGGCCTTGCCCCTTAAATAGAGGTTGTTCTTGCCCTCTACAA
GCCCTTCTCCACGTCCAACTCGGGATAGAAACCAAAGTAAACACGAAATATAGCTTTCCCGAGC
AAGAAAACTCGAGACCCGAAGAGAGCTCGGACTCTGCCGGTCAGACCGGCCACACACCGCAGGT
CTGACCGGCCCATTGTCGGCGGTCTGACCAGCCAACACACGCCGGTCAGACCGGCCCTCACAGA
GGAAAACCGGCAGACTTCCAAACTTTGGCAAGTTTTCTTATTTTATCCCTAGATGTCAAATTTG
GGTGTAAACAGTATTACTAGACTGTTAACCGGACCAGCTAGTATGATGCTGGGTTTTTCTTTTC
AGTTCTCTCAAGGTTCAGTTATTGATAATTACGACCTGTTTGGTGCAAATGTTTTCGGAAGATA
GGATGCAATAAATATGTTCTGGACTAAATTAGAGATGCTAGATCAGTTACTAACTTCATGTTGC
CAAAAGATTCAGCGAAGCAACCGACCTCCACACCAATCAGTTGCCCGGATACTGATCTGGATGT
CATTTTAGGAAACTTCGCATCGCAGCGAGCAATTTTCCCCTGTCAACTTGGGCCTGCCGCTTAC
TCTAGGGCATCTCAAGCATGTACACCTGCATTTTACTGACTACAATAGAAAATTTGGCAGGAAA
GAAACAAGCGTCTTCCAAAGTAACGAATCATTCATACAACTAGTATGCAACCAAGTCCTGGACG
AGATAAAATTTTGAAGCATGGGAGGTACCAAGATTTAGAGAAGATCATAGACATGGTGACAAAC
CTGTTTGCCATCATGGGTGTAAATTTTTACATTTCCTATATCGCCAATTTGTACATTGCTCCTT
CTAAGATAAATAGAATGCCAGCCGCCTACGCTGGTCTTTCAAAAAAAAGTACATTTCCTCTTGG
TCACTTAATTCCAGAATTGATCGTTATTTATGTACACTGAAGTCTGAAGGTAGAGAGAATTATA
AGATGCCCCTAGCTTGTGTAGTTATAGCTATGAGGGACTCGATTGCTGAATCCTTAGCGTGTAC
ATCTTTATAATGGATTCGATAGCCATGTCCTGGAAAAGGGAAAAAACTAGCAATCAGTGTTCAG
TGACTCAATCATGCCGTTTTAAAGAAAACAACAGAAACTAAATGCTAAGGCAGGGACTTTCTCA
TTTCCTAAGAAGGTATACTCTATCCGCAATGCTTGAATGAGCGCATACCAGGTAAAAACCACTC
GAAGTCTAACTTCAACAATTTTCTCATGCTGTCCAGTTGCAAGCTCA
						
					

			
		

Sequences
Splice junction sequence	GGTATACTCTATCCGCAATGCTTGAATGAGCGCATACCAGGTAAAAACCACTCGAAGTCTAACT TCAACAATTTTCTCATGCTGTCCAGTTGCAAGCTCActgattgcttgctgtacataagaaagag atctaaatcatcagattcttctgattttgcaacatgatctccagtgaaaagcgcctttactggt ttgtagaa
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTGATTGCTTGCTGTACATAAGAAAGAGATCTAAATCATCAGATTCTTCTGATTTTGCAACATG ATCTCCAGTGAAAAGCGCCTTTACTGGTTTGTAGAATAAGCAGACTGAACCCTGAAAAAAATGT TCCTTTTAATGAATGAACCCTATATATGCTGAAGAAGGTTAGATTGGTTGTCCAAATCTCAGTT TATGAGCTTTGGACAATTTTTGACAGAACATGTTCCTTCGTCTCTAAGGTTGAGGAAAATTTGG GACAGGATATGGTGATAATCCAATCTAATCTTTATGCGCAAAAATAGTGCACATATGACATATC TTGACCCTAATACTCTTTGTCTTTGATGTTGTATGTTTAAGGATGTTCCATCCAATCCAGAGAA GCCTTCCATACTGAAAGCTACAAGTAATTGCTCAAACAACTTCTTTCATTAAGTTGAACTTACT TCAGTATGACCTGGGGTATGGATAAGTTCGAAATCAGCTCCAATGTCCCATGGGCCATTTCCAG TAAGTTTCCACTCAACATCTGCAGTAACATCCTCTACCTGCATCAGCACAGTAATTGCAGTAAA TATCAGGAGAAGTATCTGAGAGCAACATTCACTGGAGAAATAGGTAAATCAGACTCTACACTAT GTTCATGTCATGCAAGCTCTGACACGATATAACTGTCCTCTCTGTACTGCTAATCAGTACTTGT ACTGCAGGTTATAAAGTTTGACAGTGTTGATTGAGTACTCGATGAGGATCAGTCAGGACTCAGG AATAAGCGATGTCTTTCTAGGGTCAGACAGAAGGATGATCATGATTCTTTGAAATCGTTTGGAT GAGGGTCTTACATCGCCCGAATGGATGATCCTCTCACATTTTAGCCGCTCAGCCCACTTCCTAT GATCCGCGACATCATCCCTGTAAGTAACTCAATAGACGCTCTTCAATATCCAAAATAAAAGGGA GTGCGTTAAAAAAAGGCAATTAAAAAAGAGAACTATGTGATACAGCTTTAAGTCCGGAAATACA TGTGGGTCAAAAACATGTAGCGTGCTCCACCAAGTTTTTCGATGTTCTCTGCCAGTTTCGTTGT ATACCTTGGGCTGTAAAATCAGAAAATATCAGAAGACCTAGTGATAACCACATATAAACTGGAC AATAAGATTTGGGAGAGATGATCTCCAATTTGTGAGGAAAAAAATGCTATCACATTGACCAGTA CGCTGTGCTGAAATTGAATACTTATCAGCAGGAACACTAGCAATTAATGTATCTGATTACAACT TGATAATTTTTTTTGTCTGGAGATGGAAAGATGGGTACTTAGGGACATGAACAAATTCATAAGC TTATTGGAATTAACCTGTCAACTAGTATGTTTCCATCTGGATGGGTTAAAAGATAAGAAGTTGC TCCATATGAATCTTGAGAATGATAGCCACAGAGGTAAACACCCTGGAAGTTTTGAGCAGTGCAA CAAGGATGAGTATGAATATAATTTAATTGAGATAAATTGGGTGAAATCCGGAATGAGGAGAGCA AGTGATACAGGGAGAAGATGATTGTCGATGGGGAGCGGGAACATGTTTTGCACTTGAAGAATGT CCTTTGCAGGTTTCTCGGTGTGAATGGAGGAAGTAGGACAGGAGAGCAGAGCCTGGACATCAAT GGCAGGCATGGTTCAATTTTGCATTGAAATTCAGTAAAAGAGAGGCAGAGCTACCTGCAGGGCC TTGGTCCTGTGTTCGTCGGAGATGGGCTGCGCGGCGACGGCGGCTTTTCCGTCCACCCTCTTGA ACACCTCCTGCAATTCAAATCACCATCACCAAGCAAAGCAGCTGAAGCATCAAGCATATGCATA TATGAAAGACTAGTTACCGAAGCCATCCAGCGGCAGGTCTGGCAATCGATGCATCGGTGATCTG CAGCAAACAAACTCAACTGAAGCGCATCAGGAAGAGAAATTAAATGGAGACCGATTTCAGGTGC AGGGCTCGATCAGTGGCTCACCGACGAAGAAGTCGCCGGGGACGTTCTGCGGGCGGCGGCGTTG GAGTGCCGGAGAGGACGCCGAAGAGGCAACAGCTCGTGGTCGTCGCGGCGGCGGAGCAGCGACG GACGCTGGGGGGGCGAAGCGAAGGCTCATCATCAACGCCATGGCGGAACAGCAGCGTCAGCGAC AGCGTGCGTGCTACAACTAGCAGCGTTCGCTCTGCGCAGGGCAGCAGATGCACAAAACGACCCT CACGACTGACGTCACAGCAAACGCCAACATCCACCAAAGTCAGAGGATCCGTTTCCCAACATCC TGCACGTACGGCTCGATTTTTTCCCTTTTTCTTTTCTTTCTTTTTTTTACTGAGTGCCCATTTT AACACTCGATCAATAATAAACTACTCTAGTTCTAGTATGAAATGAGTCTGTACCCATTATAGAT ATGTTTTTGAGATAAGTATTTGTTGATAACTTTTTGTGACAAGTAGACAAGCACGATCGCAACA ACTAAACGCCTTGCAGTGATATGAAATCGCCAACCACCTCGATCTAGCCAAAAGGCTAAATCAA GATGGGTTTTATAGAAAAACAGCTAAATCGGCTAGCGGAGCCGATTTAGAGATCAAAATCAGCC TCTAGGCCGATTTAGATCGATATGAGGATAACTACCCGTCTCGTGGGCAAAACAGAAGGTTTTT AGGACAAACCTACAAAGAGGTGTCGCACTCTTGCAGCGGCGGCGGACGGTTTACGGCGCAAACC GACAAAGATGGACTAAACTAGGGTAAAATAGAAAACATAGTAAAAGAACGATTCAAGTAGATTG TATTCAGGGTATTACAATGAATCGGCCTTGCCCCTTAAATAGAGGTTGTTCTTGCCCTCTACAA GCCCTTCTCCACGTCCAACTCGGGATAGAAACCAAAGTAAACACGAAATATAGCTTTCCCGAGC AAGAAAACTCGAGACCCGAAGAGAGCTCGGACTCTGCCGGTCAGACCGGCCACACACCGCAGGT CTGACCGGCCCATTGTCGGCGGTCTGACCAGCCAACACACGCCGGTCAGACCGGCCCTCACAGA GGAAAACCGGCAGACTTCCAAACTTTGGCAAGTTTTCTTATTTTATCCCTAGATGTCAAATTTG GGTGTAAACAGTATTACTAGACTGTTAACCGGACCAGCTAGTATGATGCTGGGTTTTTCTTTTC AGTTCTCTCAAGGTTCAGTTATTGATAATTACGACCTGTTTGGTGCAAATGTTTTCGGAAGATA GGATGCAATAAATATGTTCTGGACTAAATTAGAGATGCTAGATCAGTTACTAACTTCATGTTGC CAAAAGATTCAGCGAAGCAACCGACCTCCACACCAATCAGTTGCCCGGATACTGATCTGGATGT CATTTTAGGAAACTTCGCATCGCAGCGAGCAATTTTCCCCTGTCAACTTGGGCCTGCCGCTTAC TCTAGGGCATCTCAAGCATGTACACCTGCATTTTACTGACTACAATAGAAAATTTGGCAGGAAA GAAACAAGCGTCTTCCAAAGTAACGAATCATTCATACAACTAGTATGCAACCAAGTCCTGGACG AGATAAAATTTTGAAGCATGGGAGGTACCAAGATTTAGAGAAGATCATAGACATGGTGACAAAC CTGTTTGCCATCATGGGTGTAAATTTTTACATTTCCTATATCGCCAATTTGTACATTGCTCCTT CTAAGATAAATAGAATGCCAGCCGCCTACGCTGGTCTTTCAAAAAAAAGTACATTTCCTCTTGG TCACTTAATTCCAGAATTGATCGTTATTTATGTACACTGAAGTCTGAAGGTAGAGAGAATTATA AGATGCCCCTAGCTTGTGTAGTTATAGCTATGAGGGACTCGATTGCTGAATCCTTAGCGTGTAC ATCTTTATAATGGATTCGATAGCCATGTCCTGGAAAAGGGAAAAAACTAGCAATCAGTGTTCAG TGACTCAATCATGCCGTTTTAAAGAAAACAACAGAAACTAAATGCTAAGGCAGGGACTTTCTCA TTTCCTAAGAAGGTATACTCTATCCGCAATGCTTGAATGAGCGCATACCAGGTAAAAACCACTC GAAGTCTAACTTCAACAATTTTCTCATGCTGTCCAGTTGCAAGCTCA

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.841087345

Conservation Information
Conserved circRNAs	NA
PMCS	0.841087345

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							osa-miR408-5p 						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	osa-miR408-5p
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os02g0829500_circ_ag.2

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