Plant Circular RNA Database

Detail information of Os02g0829500_circ_ag.6

			
						 General Information
					
						CircRNA Name
						Os02g0829500_circ_ag.6
					
						ID in PlantcircBase
						osa_circ_017351
					
						Alias
						Os_ciR376
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 35663049-35667000  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ag-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							Os02g0829500_circ_ag.1 Os02g0829500_circ_ag.2 Os02g0829500_circ_ag.3 Os02g0829500_circ_ag.4 Os02g0829500_circ_ag.5 Os02g0829500_circ_ag.7 Os02g0829600_circ_g.1 Os02g0829600_circ_g.2 						
					
						Support reads
						209/13
					
						Tissues
						root/seed
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	Os02g0829500_circ_ag.6
ID in PlantcircBase	osa_circ_017351
Alias	Os_ciR376
Organism	Oryza sativa
Position	chr2: 35663049-35667000 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ag-circRNA
Identification method	find_circ
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	Os02g0829500_circ_ag.1 Os02g0829500_circ_ag.2 Os02g0829500_circ_ag.3 Os02g0829500_circ_ag.4 Os02g0829500_circ_ag.5 Os02g0829500_circ_ag.7 Os02g0829600_circ_g.1 Os02g0829600_circ_g.2
Support reads	209/13
Tissues	root/seed
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GATGAGTGTCGATGGGGAGGGGGAACATGTTTTGCACTTGAAGAATGTCTTTTGCAGGTTTCTC
GGTGTGAATGGAGGCAGTAGGACAGGAGAGCAGAGCctgcagggccttggtcctgtgttcgtcg
gagatgggctgcgcggcgacggcggcttttccgtccaccctcttgaacacctcctgcaattcaa
atcaccat

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTGCAGGGCCTTGGTCCTGTGTTCGTCGGAGATGGGCTGCGCGGCGACGGCGGCTTTTCCGTCC
ACCCTCTTGAACACCTCCTGCAATTCAAATCACCATCACCAAGCAAAGCAGCTGAAGCATCAAG
CATATGCATATATGAAAGACTAGTTACCGAAGCCATCCAGCGGCAGGTCTGGCAATCGATGCAT
CGGTGATCTGCAGCAAACAAACTCAACTGAAGCGCATCAGGAAGAGAAATTAAATGGAGACCGA
TTTCAGGTGCAGGGCTCGATCAGTGGCTCACCGACGAAGAAGTCGCCGGGGACGTTCTGCGGGC
GGCGGCGTTGGAGTGCCGGAGAGGACGCCGAAGAGGCAACAGCTCGTGGTCGTCGCGGCGGCGG
AGCAGCGACGGACGCTGGGGGGGCGAAGCGAAGGCTCATCATCAACGCCATGGCGGAACAGCAG
CGTCAGCGACAGCGTGCGTGCTACAACTAGCAGCGTTCGCTCTGCGCAGGGCAGCAGATGCACA
AAACGACCCTCACGACTGACGTCACAGCAAACGCCAACATCCACCAAAGTCAGAGGATCCGTTT
CCCAACATCCTGCACGTACGGCTCGATTTTTTCCCTTTTTCTTTTCTTTCTTTTTTTTACTGAG
TGCCCATTTTAACACTCGATCAATAATAAACTACTCTAGTTCTAGTATGAAATGAGTCTGTACC
CATTATAGATATGTTTTTGAGATAAGTATTTGTTGATAACTTTTTGTGACAAGTAGACAAGCAC
GATCGCAACAACTAAACGCCTTGCAGTGATATGAAATCGCCAACCACCTCGATCTAGCCAAAAG
GCTAAATCAAGATGGGTTTTATAGAAAAACAGCTAAATCGGCTAGCGGAGCCGATTTAGAGATC
AAAATCAGCCTCTAGGCCGATTTAGATCGATATGAGGATAACTACCCGTCTCGTGGGCAAAACA
GAAGGTTTTTAGGACAAACCTACAAAGAGGTGTCGCACTCTTGCAGCGGCGGCGGACGGTTTAC
GGCGCAAACCGACAAAGATGGACTAAACTAGGGTAAAATAGAAAACATAGTAAAAGAACGATTC
AAGTAGATTGTATTCAGGGTATTACAATGAATCGGCCTTGCCCCTTAAATAGAGGTTGTTCTTG
CCCTCTACAAGCCCTTCTCCACGTCCAACTCGGGATAGAAACCAAAGTAAACACGAAATATAGC
TTTCCCGAGCAAGAAAACTCGAGACCCGAAGAGAGCTCGGACTCTGCCGGTCAGACCGGCCACA
CACCGCAGGTCTGACCGGCCCATTGTCGGCGGTCTGACCAGCCAACACACGCCGGTCAGACCGG
CCCTCACAGAGGAAAACCGGCAGACTTCCAAACTTTGGCAAGTTTTCTTATTTTATCCCTAGAT
GTCAAATTTGGGTGTAAACAGTATTACTAGACTGTTAACCGGACCAGCTAGTATGATGCTGGGT
TTTTCTTTTCAGTTCTCTCAAGGTTCAGTTATTGATAATTACGACCTGTTTGGTGCAAATGTTT
TCGGAAGATAGGATGCAATAAATATGTTCTGGACTAAATTAGAGATGCTAGATCAGTTACTAAC
TTCATGTTGCCAAAAGATTCAGCGAAGCAACCGACCTCCACACCAATCAGTTGCCCGGATACTG
ATCTGGATGTCATTTTAGGAAACTTCGCATCGCAGCGAGCAATTTTCCCCTGTCAACTTGGGCC
TGCCGCTTACTCTAGGGCATCTCAAGCATGTACACCTGCATTTTACTGACTACAATAGAAAATT
TGGCAGGAAAGAAACAAGCGTCTTCCAAAGTAACGAATCATTCATACAACTAGTATGCAACCAA
GTCCTGGACGAGATAAAATTTTGAAGCATGGGAGGTACCAAGATTTAGAGAAGATCATAGACAT
GGTGACAAACCTGTTTGCCATCATGGGTGTAAATTTTTACATTTCCTATATCGCCAATTTGTAC
ATTGCTCCTTCTAAGATAAATAGAATGCCAGCCGCCTACGCTGGTCTTTCAAAAAAAAGTACAT
TTCCTCTTGGTCACTTAATTCCAGAATTGATCGTTATTTATGTACACTGAAGTCTGAAGGTAGA
GAGAATTATAAGATGCCCCTAGCTTGTGTAGTTATAGCTATGAGGGACTCGATTGCTGAATCCT
TAGCGTGTACATCTTTATAATGGATTCGATAGCCATGTCCTGGAAAAGGGAAAAAACTAGCAAT
CAGTGTTCAGTGACTCAATCATGCCGTTTTAAAGAAAACAACAGAAACTAAATGCTAAGGCAGG
GACTTTCTCATTTCCTAAGAAGGTATACTCTATCCGCAATGCTTGAATGAGCGCATACCAGGTA
AAAACCACTCGAAGTCTAACTTCAACAATTTTCTCATGCTGTCCAGTTGCAAGCTCACTGCAAA
TTTATGCAATAGATAGATTATTAATCCGATTTGTAAGCTAATTGTACAATTGCACAGTTATGTC
CAGTTAGACAAAATCTAGGGAGGATTCTACCTGGTTGCCTGCTGTACATAAGAAAGAGATATAA
ATCATCAGATTCTTCTGATTTTGCAACGTGATCTCCAGTGAAAAGCGCCTTTACTGGTTTGTAG
AACAAGCAGACCGAACCCTGAAAAAAAAATGCTCATTTTAATGAATGAACCCTGAAAAAAAATG
CTCTTAATGTCCAACAACAGCGCACATATCTTTCACCCTGCTACTCTTTAGTGTTCTATGTTTA
AGAATGTTTCACCCAATCCAGAGAAGCCTTCCATACTGAAGGCAACAAGTAATTGCTTAAACAA
CTTATTTCATTAAGTTGAACTTCTTACTTGGGTATGGCCAGGGGTATGGATAAGTTCGAAATCA
GCTCCAATGTTCCAAGGACCATTGCCAGTAAGTTTCCGCTCAACATCTACGGTAGCACGCTCTA
CCTGCATGAGCATGGTAATTGCAGTAAAGAATATCAGGAGAGGCATCTGAGAGCAAAACTCGCT
GGAAAAATAGGTAAGCTAGACTCTACACTAGTACATGTAGTGCAAACTATGAATAATTGTCCTC
TACGTACTTCAAGTTATGAACTATAGGTAAAATTTGCTACAAAAAGATGCAATCGTTTGCATGA
GGGTCTTACATCGCCCGAATGGATAATCCTCTCACATTTTAGCCGCTCAGCCCACTTCCTATGA
TCTGCTACATCATCCCTGTAAGTAACTCATTAGACGCTATTCAATATCCAAATAAAATATTTAA
AATAAAGAAGCGGCGCATTCAGAAAAACAAAAAATAGATAAACATGTTATACAACTTTTAGTTC
AAACATACCTGTGGGTCAAAAACATGTAGCGTGCTCCACCAAGTTCTTCGATGTTATTTGCCAG
TTTCGTTGTATACCTTGGGCTAGAAAATCAGAAAAATATCAGAAGACCTACTGATAACCACATG
TAAGCTGGACAAGAAGACTTGCTAGAGATGATCTCCAATTTGTGAAAAATGCTACCAATTTGTG
AAATTGAATACTTGTCAGAAGGAAAACTATCAATGTATCCGATTGGAACTTGATAAGTTGTTTG
TCTGGCCATGGCAAGATGGGTACTAGGGATATAAACAATTTAGTAAGTGCATTGGAATCTACCT
GTCGACTAGTATGTTTCCATCTGGATGGGTTATAAGATAAGAAGTTGCTCCAAACGAGTCTTCA
GAATGATAACCACAATGATAAACACCCTGGAAAGATTTGAGCAGTGCAGGATGGATGACATATA
TAACATGAGAGTATTAATTTAATTGAGATAAATTGGGTGAAATCCGGAATGAGGAGAGCAAGTC
ATACAGGGAGAAGATGAGTGTCGATGGGGAGGGGGAACATGTTTTGCACTTGAAGAATGTCTTT
TGCAGGTTTCTCGGTGTGAATGGAGGCAGTAGGACAGGAGAGCAGAGC
						
					

			
		

Sequences
Splice junction sequence	GATGAGTGTCGATGGGGAGGGGGAACATGTTTTGCACTTGAAGAATGTCTTTTGCAGGTTTCTC GGTGTGAATGGAGGCAGTAGGACAGGAGAGCAGAGCctgcagggccttggtcctgtgttcgtcg gagatgggctgcgcggcgacggcggcttttccgtccaccctcttgaacacctcctgcaattcaa atcaccat
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTGCAGGGCCTTGGTCCTGTGTTCGTCGGAGATGGGCTGCGCGGCGACGGCGGCTTTTCCGTCC ACCCTCTTGAACACCTCCTGCAATTCAAATCACCATCACCAAGCAAAGCAGCTGAAGCATCAAG CATATGCATATATGAAAGACTAGTTACCGAAGCCATCCAGCGGCAGGTCTGGCAATCGATGCAT CGGTGATCTGCAGCAAACAAACTCAACTGAAGCGCATCAGGAAGAGAAATTAAATGGAGACCGA TTTCAGGTGCAGGGCTCGATCAGTGGCTCACCGACGAAGAAGTCGCCGGGGACGTTCTGCGGGC GGCGGCGTTGGAGTGCCGGAGAGGACGCCGAAGAGGCAACAGCTCGTGGTCGTCGCGGCGGCGG AGCAGCGACGGACGCTGGGGGGGCGAAGCGAAGGCTCATCATCAACGCCATGGCGGAACAGCAG CGTCAGCGACAGCGTGCGTGCTACAACTAGCAGCGTTCGCTCTGCGCAGGGCAGCAGATGCACA AAACGACCCTCACGACTGACGTCACAGCAAACGCCAACATCCACCAAAGTCAGAGGATCCGTTT CCCAACATCCTGCACGTACGGCTCGATTTTTTCCCTTTTTCTTTTCTTTCTTTTTTTTACTGAG TGCCCATTTTAACACTCGATCAATAATAAACTACTCTAGTTCTAGTATGAAATGAGTCTGTACC CATTATAGATATGTTTTTGAGATAAGTATTTGTTGATAACTTTTTGTGACAAGTAGACAAGCAC GATCGCAACAACTAAACGCCTTGCAGTGATATGAAATCGCCAACCACCTCGATCTAGCCAAAAG GCTAAATCAAGATGGGTTTTATAGAAAAACAGCTAAATCGGCTAGCGGAGCCGATTTAGAGATC AAAATCAGCCTCTAGGCCGATTTAGATCGATATGAGGATAACTACCCGTCTCGTGGGCAAAACA GAAGGTTTTTAGGACAAACCTACAAAGAGGTGTCGCACTCTTGCAGCGGCGGCGGACGGTTTAC GGCGCAAACCGACAAAGATGGACTAAACTAGGGTAAAATAGAAAACATAGTAAAAGAACGATTC AAGTAGATTGTATTCAGGGTATTACAATGAATCGGCCTTGCCCCTTAAATAGAGGTTGTTCTTG CCCTCTACAAGCCCTTCTCCACGTCCAACTCGGGATAGAAACCAAAGTAAACACGAAATATAGC TTTCCCGAGCAAGAAAACTCGAGACCCGAAGAGAGCTCGGACTCTGCCGGTCAGACCGGCCACA CACCGCAGGTCTGACCGGCCCATTGTCGGCGGTCTGACCAGCCAACACACGCCGGTCAGACCGG CCCTCACAGAGGAAAACCGGCAGACTTCCAAACTTTGGCAAGTTTTCTTATTTTATCCCTAGAT GTCAAATTTGGGTGTAAACAGTATTACTAGACTGTTAACCGGACCAGCTAGTATGATGCTGGGT TTTTCTTTTCAGTTCTCTCAAGGTTCAGTTATTGATAATTACGACCTGTTTGGTGCAAATGTTT TCGGAAGATAGGATGCAATAAATATGTTCTGGACTAAATTAGAGATGCTAGATCAGTTACTAAC TTCATGTTGCCAAAAGATTCAGCGAAGCAACCGACCTCCACACCAATCAGTTGCCCGGATACTG ATCTGGATGTCATTTTAGGAAACTTCGCATCGCAGCGAGCAATTTTCCCCTGTCAACTTGGGCC TGCCGCTTACTCTAGGGCATCTCAAGCATGTACACCTGCATTTTACTGACTACAATAGAAAATT TGGCAGGAAAGAAACAAGCGTCTTCCAAAGTAACGAATCATTCATACAACTAGTATGCAACCAA GTCCTGGACGAGATAAAATTTTGAAGCATGGGAGGTACCAAGATTTAGAGAAGATCATAGACAT GGTGACAAACCTGTTTGCCATCATGGGTGTAAATTTTTACATTTCCTATATCGCCAATTTGTAC ATTGCTCCTTCTAAGATAAATAGAATGCCAGCCGCCTACGCTGGTCTTTCAAAAAAAAGTACAT TTCCTCTTGGTCACTTAATTCCAGAATTGATCGTTATTTATGTACACTGAAGTCTGAAGGTAGA GAGAATTATAAGATGCCCCTAGCTTGTGTAGTTATAGCTATGAGGGACTCGATTGCTGAATCCT TAGCGTGTACATCTTTATAATGGATTCGATAGCCATGTCCTGGAAAAGGGAAAAAACTAGCAAT CAGTGTTCAGTGACTCAATCATGCCGTTTTAAAGAAAACAACAGAAACTAAATGCTAAGGCAGG GACTTTCTCATTTCCTAAGAAGGTATACTCTATCCGCAATGCTTGAATGAGCGCATACCAGGTA AAAACCACTCGAAGTCTAACTTCAACAATTTTCTCATGCTGTCCAGTTGCAAGCTCACTGCAAA TTTATGCAATAGATAGATTATTAATCCGATTTGTAAGCTAATTGTACAATTGCACAGTTATGTC CAGTTAGACAAAATCTAGGGAGGATTCTACCTGGTTGCCTGCTGTACATAAGAAAGAGATATAA ATCATCAGATTCTTCTGATTTTGCAACGTGATCTCCAGTGAAAAGCGCCTTTACTGGTTTGTAG AACAAGCAGACCGAACCCTGAAAAAAAAATGCTCATTTTAATGAATGAACCCTGAAAAAAAATG CTCTTAATGTCCAACAACAGCGCACATATCTTTCACCCTGCTACTCTTTAGTGTTCTATGTTTA AGAATGTTTCACCCAATCCAGAGAAGCCTTCCATACTGAAGGCAACAAGTAATTGCTTAAACAA CTTATTTCATTAAGTTGAACTTCTTACTTGGGTATGGCCAGGGGTATGGATAAGTTCGAAATCA GCTCCAATGTTCCAAGGACCATTGCCAGTAAGTTTCCGCTCAACATCTACGGTAGCACGCTCTA CCTGCATGAGCATGGTAATTGCAGTAAAGAATATCAGGAGAGGCATCTGAGAGCAAAACTCGCT GGAAAAATAGGTAAGCTAGACTCTACACTAGTACATGTAGTGCAAACTATGAATAATTGTCCTC TACGTACTTCAAGTTATGAACTATAGGTAAAATTTGCTACAAAAAGATGCAATCGTTTGCATGA GGGTCTTACATCGCCCGAATGGATAATCCTCTCACATTTTAGCCGCTCAGCCCACTTCCTATGA TCTGCTACATCATCCCTGTAAGTAACTCATTAGACGCTATTCAATATCCAAATAAAATATTTAA AATAAAGAAGCGGCGCATTCAGAAAAACAAAAAATAGATAAACATGTTATACAACTTTTAGTTC AAACATACCTGTGGGTCAAAAACATGTAGCGTGCTCCACCAAGTTCTTCGATGTTATTTGCCAG TTTCGTTGTATACCTTGGGCTAGAAAATCAGAAAAATATCAGAAGACCTACTGATAACCACATG TAAGCTGGACAAGAAGACTTGCTAGAGATGATCTCCAATTTGTGAAAAATGCTACCAATTTGTG AAATTGAATACTTGTCAGAAGGAAAACTATCAATGTATCCGATTGGAACTTGATAAGTTGTTTG TCTGGCCATGGCAAGATGGGTACTAGGGATATAAACAATTTAGTAAGTGCATTGGAATCTACCT GTCGACTAGTATGTTTCCATCTGGATGGGTTATAAGATAAGAAGTTGCTCCAAACGAGTCTTCA GAATGATAACCACAATGATAAACACCCTGGAAAGATTTGAGCAGTGCAGGATGGATGACATATA TAACATGAGAGTATTAATTTAATTGAGATAAATTGGGTGAAATCCGGAATGAGGAGAGCAAGTC ATACAGGGAGAAGATGAGTGTCGATGGGGAGGGGGAACATGTTTTGCACTTGAAGAATGTCTTT TGCAGGTTTCTCGGTGTGAATGGAGGCAGTAGGACAGGAGAGCAGAGC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_011293 						
					
						PMCS
						0.767304359

Conservation Information
Conserved circRNAs	osi_circ_011293
PMCS	0.767304359

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							osa-miR408-5p 						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	osa-miR408-5p
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os02g0829500_circ_ag.6

Address

Any questions?

Supported by