Detail information of Os06g0106100_circ_g.7


General Information
CircRNA Name Os06g0106100_circ_g.7
ID in PlantcircBase osa_circ_042227
Alias NA
Organism Oryza sativa
Position chr6: 414980-415116  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRI-long
Parent gene Os06g0106100
Parent gene annotation Cwf15/Cwc15 cell cycle control protein family protein. (Os06t010
6100-01);Similar to pre-mRNA-splicing factor cwc15. (Os06t010610
0-02)
Parent gene strand -
Alternative splicing Os06g0106100_circ_g.1 Os06g0106100_circ_g.2 Os06g0106100_circ_g.3 Os06g0106100_circ_g.4 Os06g0106100_circ_g.5 Os06g0106100_circ_g.6
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CA-AC
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATAATTTGGCGAGCAATCTATGAACAAAAGAGGGAGCAGTATAATACACAAAGACCCAAAGTTA
GTACatcaatttaaatacaatgggcaagtaattatacaagggaacaagaaaaaattcacaggaa
aatatataa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 137
Transcript exons: 414980-415116
ATCAATTTAAATACAATGGGCAAGTAATTATACAAGGGAACAAGAAAAAATTCACAGGAAAATA
TATAAATAATTTGGCGAGCAATCTATGAACAAAAGAGGGAGCAGTATAATACACAAAGACCCAA
AGTTAGTAC

Genomic sequence ATCAATTTAAATACAATGGGCAAGTAATTATACAAGGGAACAAGAAAAAATTCACAGGAAAATA
TATAAATAATTTGGCGAGCAATCTATGAACAAAAGAGGGAGCAGTATAATACACAAAGACCCAA
AGTTAGTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.196472019
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study