Detail information of BGIOSGA017060_circ_g.4


General Information
CircRNA Name BGIOSGA017060_circ_g.4
ID in PlantcircBase osi_circ_005699
Alias 4:29278907|29279364
Organism Oryza sativa ssp. indica
Position chr4: 29278907-29279364  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA017060
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA017060_circ_g.1 BGIOSGA017060_circ_g.2 BGIOSGA017060_circ_g.3
Support reads NA
Tissues leaf
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered BGIOSGA017060-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGGATCTCTCCGCAGTTCCTTCCAGTTACTGTAGCGGGCAGTTAGATCCAAATAAGGTTCTTC
AAGGCTGAGAGTTCTAATTTACTACACCATGTACAGgttgacaaaatatatctagatgcaccag
caaaaattgcaatcattgatcatgagaagaaacggacatttgtcttaaggaaagacgggcttcc
agatgctg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTGACAAAATATATCTAGATGCACCAGCAAAAATTGCAATCATTGATCATGAGAAGAAACGGA
CATTTGTCTTAAGGAAAGACGGGCTTCCAGATGCTGGTAAGCTTATTTATCACAGTAATTTTCT
TTTGTTAAAGAATATGATTGTAGATCTTTGTATCCAGCTGTATCAAACACCAATTTTTGCCTGT
CAGCGTGCATACTTTTGCCTGTGTAGTTTTGTGGAACCCATGGGACAAGAGGACAAAAAACATG
CAAGACTTTGGGGATGAAGAATACAAACATATGTTGTGTGTTGAACCTGCAGCCGTTGAGAAGC
CCATTACCTTGAAGCCTGGCGAAGAGTGGAAAGGAAAAATGGATCTCTCCGCAGTTCCTTCCAG
TTACTGTAGCGGGCAGTTAGATCCAAATAAGGTTCTTCAAGGCTGAGAGTTCTAATTTACTACA
CCATGTACAG
Conservation Information
Conserved circRNAs osa_circ_025090*
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021