Detail information of BGIOSGA017060_circ_g.2


General Information
CircRNA Name BGIOSGA017060_circ_g.2
ID in PlantcircBase osi_circ_005698
Alias 4:29278738|29279364
Organism Oryza sativa ssp. indica
Position chr4: 29278738-29279364  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA017060
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA017060_circ_g.1 BGIOSGA017060_circ_g.3 BGIOSGA017060_circ_g.4
Support reads NA
Tissues leaf
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered BGIOSGA017060-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGGATCTCTCCGCAGTTCCTTCCAGTTACTGTAGCGGGCAGTTAGATCCAAATAAGGTTCTTC
AAGGCTGAGAGTTCTAATTTACTACACCATGTACAGtgaagtgcgcattgaaggcttggagaca
ctggactacattgactgtctgaggggaaaagagcgatccacagagcaaggggacgctattgtgt
tcgaatca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGAAGTGCGCATTGAAGGCTTGGAGACACTGGACTACATTGACTGTCTGAGGGGAAAAGAGCGA
TCCACAGAGCAAGGGGACGCTATTGTGTTCGAATCAGAGGTAAAGTAAGCCACTTAAATGCTAT
AAATGATACTACATAGACTGATCTGTAAATGATACCTTCAGGTTGACAAAATATATCTAGATGC
ACCAGCAAAAATTGCAATCATTGATCATGAGAAGAAACGGACATTTGTCTTAAGGAAAGACGGG
CTTCCAGATGCTGGTAAGCTTATTTATCACAGTAATTTTCTTTTGTTAAAGAATATGATTGTAG
ATCTTTGTATCCAGCTGTATCAAACACCAATTTTTGCCTGTCAGCGTGCATACTTTTGCCTGTG
TAGTTTTGTGGAACCCATGGGACAAGAGGACAAAAAACATGCAAGACTTTGGGGATGAAGAATA
CAAACATATGTTGTGTGTTGAACCTGCAGCCGTTGAGAAGCCCATTACCTTGAAGCCTGGCGAA
GAGTGGAAAGGAAAAATGGATCTCTCCGCAGTTCCTTCCAGTTACTGTAGCGGGCAGTTAGATC
CAAATAAGGTTCTTCAAGGCTGAGAGTTCTAATTTACTACACCATGTACAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021