Detail information of BGIOSGA017060_circ_g.3


General Information
CircRNA Name BGIOSGA017060_circ_g.3
ID in PlantcircBase osi_circ_014742
Alias Chr04:31129811_31130269(MH63RS2), Chr04:31129811_31130269(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 29278906-29279364  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRI2, find_circ
Parent gene BGIOSGA017060
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA017060_circ_g.1 BGIOSGA017060_circ_g.2 BGIOSGA017060_circ_g.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-CA
Number of exons covered BGIOSGA017060-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGGATCTCTCCGCAGTTCCTTCCAGTTACTGTAGCGGGCAGTTAGATCCAAATAAGGTTCTTC
AAGGCTGAGAGTTCTAATTTACTACACCATGTACAGggttgacaaaatatatctagatgcacca
gcaaaaattgcaatcattgatcatgagaagaaacggacatttgtcttaaggaaagacgggcttc
cagatgct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTGACAAAATATATCTAGATGCACCAGCAAAAATTGCAATCATTGATCATGAGAAGAAACGG
ACATTTGTCTTAAGGAAAGACGGGCTTCCAGATGCTGGTAAGCTTATTTATCACAGTAATTTTC
TTTTGTTAAAGAATATGATTGTAGATCTTTGTATCCAGCTGTATCAAACACCAATTTTTGCCTG
TCAGCGTGCATACTTTTGCCTGTGTAGTTTTGTGGAACCCATGGGACAAGAGGACAAAAAACAT
GCAAGACTTTGGGGATGAAGAATACAAACATATGTTGTGTGTTGAACCTGCAGCCGTTGAGAAG
CCCATTACCTTGAAGCCTGGCGAAGAGTGGAAAGGAAAAATGGATCTCTCCGCAGTTCCTTCCA
GTTACTGTAGCGGGCAGTTAGATCCAAATAAGGTTCTTCAAGGCTGAGAGTTCTAATTTACTAC
ACCATGTACAG
Conservation Information
Conserved circRNAs osa_circ_025090
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021