Detail information of Os04g0527400_circ_g.5


General Information
CircRNA Name Os04g0527400_circ_g.5
ID in PlantcircBase osa_circ_024634
Alias NA
Organism Oryza sativa
Position chr4: 26366309-26366653  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os04g0527400
Parent gene annotation BRO1 domain containing protein. (Os04t0527400-01);BRO1 domain co
ntaining protein. (Os04t0527400-02);BRO1 domain containing prote
in. (Os04t0527400-03);BRO1 domain containing protein. (Os04t0527
400-04)
Parent gene strand +
Alternative splicing Os04g0527400_circ_g.2 Os04g0527400_circ_g.3 Os04g0527400_circ_g.4 Os04g0527400_circ_g.6
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   GA-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAATTTATAGCAAATTTCATGATTCACTGTTCTACATTGGTCCAAGTTATTCTCGGTGCAGTGG
TGCTTTCTCTGGTCAGTAAATTTGATATCATGTCCTgtacaattttctgggctcagctcatttg
gctctttcgtaaatgaactcaagaactgcattcctaaacctaatgggcattacatttgttgtag
tacttttt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 345
Transcript exons: 26366309-26366653
GTACAATTTTCTGGGCTCAGCTCATTTGGCTCTTTCGTAAATGAACTCAAGAACTGCATTCCTA
AACCTAATGGGCATTACATTTGTTGTAGTACTTTTTATGAAGCTGAAACTTTTATGCTATAGTC
CCAAGTGACATATTTGCTATATTACCCCTGAAGCTCCTATATTCTGATTAGGAATGATGCTTAG
TAATCTATTTGCATTTTTTCTGTGGGCTGAAGTAGAAACTATTAGCACTAATTCAATTTATAGC
AAATTTCATGATTCACTGTTCTACATTGGTCCAAGTTATTCTCGGTGCAGTGGTGCTTTCTCTG
GTCAGTAAATTTGATATCATGTCCT

Genomic sequence GTACAATTTTCTGGGCTCAGCTCATTTGGCTCTTTCGTAAATGAACTCAAGAACTGCATTCCTA
AACCTAATGGGCATTACATTTGTTGTAGTACTTTTTATGAAGCTGAAACTTTTATGCTATAGTC
CCAAGTGACATATTTGCTATATTACCCCTGAAGCTCCTATATTCTGATTAGGAATGATGCTTAG
TAATCTATTTGCATTTTTTCTGTGGGCTGAAGTAGAAACTATTAGCACTAATTCAATTTATAGC
AAATTTCATGATTCACTGTTCTACATTGGTCCAAGTTATTCTCGGTGCAGTGGTGCTTTCTCTG
GTCAGTAAATTTGATATCATGTCCT
Conservation Information
Conserved circRNAs NA
PMCS 0.210821256
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017