Detail information of Os04g0527400_circ_g.3


General Information
CircRNA Name Os04g0527400_circ_g.3
ID in PlantcircBase osa_circ_024632
Alias NA
Organism Oryza sativa
Position chr4: 26365082-26366869  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os04g0527400
Parent gene annotation BRO1 domain containing protein. (Os04t0527400-01);BRO1 domain co
ntaining protein. (Os04t0527400-02);BRO1 domain containing prote
in. (Os04t0527400-03);BRO1 domain containing protein. (Os04t0527
400-04)
Parent gene strand +
Alternative splicing Os04g0527400_circ_g.2 Os04g0527400_circ_g.4 Os04g0527400_circ_g.5 Os04g0527400_circ_g.6
Support reads 1
Tissues shoot
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered Os04t0527400-01:7
Os04t0527400-02:7
Os04t0527400-04:7
Os04t0527400-03:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGGCATCAAATTCAGGAGAGCATTCCAGAAATTCCGGTATCCGATGGATGGGGGAAAAAGCAT
TTATTGTTTGTTAAGTGGAAGTATGTTGAAGCAAAGggtgaggtgagctaagtcgtaggctgtc
tgccgcgcgcgtaccatgggttgtgggctgtcgagggagaaggacgccggcggcggcccacggc
ggcggccg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGAGGTGAGCTAAGTCGTAGGCTGTCTGCCGCGCGCGTACCATGGGTTGTGGGCTGTCGAGG
GAGAAGGACGCCGGCGGCGGCCCACGGCGGCGGCCGGGGAGCGTCGGCGACGTGGTCGTGTTCC
TCCCGGGGCTCCGGGTGCCGAGGAGCGTGGACTTCTCCCAGGCGCTCGCCGGTCGCCTCGACGA
GGCCTCGTCGAGGCTGTCGTCGCTGCGGGCGCGGGTCGTCGACATGGCAATGCAAGAATCGGCG
GCGGCGCTGAAGCCGAAGCGGCGGGCGGCGGCGCGGCACGGTGAGTGAGGGTGGTGGTGGTAGC
GCATCTGAATTGCTGGCTGGTTTTGCCTGCAAAATTTGGATTGGTTCTCATTTCTTTGGTTATT
TTTTCTACAGGTTCGAGCACTGCTAATCTCCTACAGGCTCTGGAAGACTATCTGCCAGTGCTGC
TAGGATTGGTGAAGGAAGGTGAGGAATTGCTCCGATATGGTGGATTGGTGTTCTGTTGGTTGAC
AATCTTGTTGTTTCGTTTGATTCAGCCTGTGAACTCTGCAGGTAGCGAATTGCGGCACGGAGTG
CACTTCGTCTGGACTAACCAAGAGGATAATGCTGAGGTATGTGTTGGGTCCTAAAAATGTGGTG
TGTCATCTTCCTCCATGATGCCCGACAGTAGCCATTAGATCTAACATTGGAATTGCCAACTGCA
GGAAACGGCCATGGCAGATGCATGGTATGAAGTGTTGTCCGTTCTGCATTTGATGGCCATGGTC
TGCTTGTTGCAGGCCAATTCTCTGCTTCTTCCCAGGTCATACGGTGATGGTTATGCGCCAAGGG
TTTCTGAAGGTATAAAACTGTTTTTCTGAACTTCTGAAGCAATATGGGCATATGAAAATGTTCA
TGTCCTGCTTTCCATTGAGTTACTTCTTTCAGTGTTTTTGTGCTAATAATGCACCATGTATTGC
CAATGTACACAGAGAGCAGACGAGCTACTGTTGATGTTTTCTTGAAGGCATCTGGCTACCTAGA
CTGCGCAATTAGACAAGTACTACCCCAAATATCGTCGGAGTTAAGGTTATGAACTTTTGAGAAG
CTGAGTAGATGATTTTGAGGATTTAAGCTGAAAGAAGGTGTATTGACATCCATTTCAATGTATG
CATTACAGGAGACAACTTCCAGTAGATCTGGCTGAAGGAAATCTCAAAGCTCTTAGCCTGCAAG
CTCTGGGTCAGGTACAATTTTCTGGGCTCAGCTCATTTGGCTCTTTCGTAAATGAACTCAAGAA
CTGCATTCCTAAACCTAATGGGCATTACATTTGTTGTAGTACTTTTTATGAAGCTGAAACTTTT
ATGCTATAGTCCCAAGTGACATATTTGCTATATTACCCCTGAAGCTCCTATATTCTGATTAGGA
ATGATGCTTAGTAATCTATTTGCATTTTTTCTGTGGGCTGAAGTAGAAACTATTAGCACTAATT
CAATTTATAGCAAATTTCATGATTCACTGTTCTACATTGGTCCAAGTTATTCTCGGTGCAGTGG
TGCTTTCTCTGGTCAGTAAATTTGATATCATGTCCTGAGCAATCGGTAATCTTTGACCTATAGG
GAGTCGACATGCAACTTGGTCTGGCAATTGATAGCCCAAAGGCCACTCTAGCGGTAAAACGGCG
CTTAGCTTGCGAGATGGTCAAATATTGGCATCAAATTCAGGAGAGCATTCCAGAAATTCCGGTA
TCCGATGGATGGGGGAAAAAGCATTTATTGTTTGTTAAGTGGAAGTATGTTGAAGCAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.225312854
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017