Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d037808_circ_g.4 |
ID in PlantcircBase | zma_circ_009064 |
Alias | zma_circ_0002334, GRMZM2G424783_C5 |
Organism | Zea mays |
Position | chr6: 138466998-138472825 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | find_circ, CIRI2 |
Parent gene | Zm00001d037808 |
Parent gene annotation |
protein_coding |
Parent gene strand | - |
Alternative splicing | Zm00001d037808_circ_g.1 Zm00001d037808_circ_g.2 Zm00001d037808_circ_g.3 Zm00001d037808_circ_g.5 Zm00001d037808_circ_g.6 Zm00001d037808_circ_g.7 Zm00001d037808_circ_g.8 Zm00001d037808_circ_g.9 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d037808_T004:6 Zm00001d037808_T005:6 Zm00001d037808_T007:3 Zm00001d037808_T001:6 Zm00001d037808_T008:3 Zm00001d037808_T006:6 Zm00001d037808_T002:6 Zm00001d037808_T003:6 Zm00001d037808_T009:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.090927943 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
138471956-138467017(+) 138472823-138472570(-) 138467034-138472570(-) |
Potential amino acid sequence |
MCLSSWNNSFFVLITFPCIHGTCILSRYKEWCIHKDLTNEFSELQKLLGVDNHSLLQHSSVILL YFPLSISCQRDMQIQPNCKHQFCKGVKGWTITFSLFFHRQFSPLKG*(+) MEEQRERYGPALYTLTKLVLAIRLYLHVSLARYGQRKIEKDDAAVLQQAVVIYTKEFLKFTEFI GEVFVNAPFFISAEDAGAVDARKSDEYKETIIPAGKTHEVILSVEAVNSYIAWDFSLQQGALNM VLDIGFHVEYISPSGEKTAYGRTKRTLWSSPLHPYKTGACNSVVFACLFGTIWTKENREG*(-) MWSTLALQGRKLPMEEQRERYGPALYTLTKLVLAIRLYLHVSLARYGQRKIEKDDAAVLQQAVV IYTKEFLKFTEFIGEVFVNAPFFISAEDAGAVDARKSDEYKETIIPAGKTHEVILSVEAVNSYI AWDFSLQQGALNMVLDIGFHVEYISPSGEKTAYGRTKRTLWSSPLHPYKTGACNSVVFACLFGT IWTKENREG*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Ma et al., 2021b;Zhang et al., 2019 |