Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d037808_circ_g.3 |
ID in PlantcircBase | zma_circ_002329 |
Alias | circ1999 |
Organism | Zea mays |
Position | chr6: 138466997-138472825 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | CIRCexplor2 |
Parent gene | Zm00001d037808 |
Parent gene annotation |
protein_coding |
Parent gene strand | - |
Alternative splicing | Zm00001d037808_circ_g.1 Zm00001d037808_circ_g.2 Zm00001d037808_circ_g.4 Zm00001d037808_circ_g.5 Zm00001d037808_circ_g.6 Zm00001d037808_circ_g.7 Zm00001d037808_circ_g.8 Zm00001d037808_circ_g.9 |
Support reads | 7 |
Tissues | seedling leaves |
Exon boundary | No-Yes |
Splicing signals | CT-TA |
Number of exons covered | Zm00001d037808_T007:3 Zm00001d037808_T001:6 Zm00001d037808_T009:6 Zm00001d037808_T005:6 Zm00001d037808_T008:3 Zm00001d037808_T003:6 Zm00001d037808_T002:6 Zm00001d037808_T004:6 Zm00001d037808_T006:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.034185453 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chen et al., 2017b |