Detail information of Os10g0160000_circ_g.3


General Information
CircRNA Name Os10g0160000_circ_g.3
ID in PlantcircBase osa_circ_006256
Alias NA
Organism Oryza sativa
Position chr10: 3833314-3833593  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os10g0160000
Parent gene annotation Similar to Ubiquitin carboxyl-terminal hydrolase 12 (EC 3.1.2.15
) (Ubiquitin thiolesterase 12) (Ubiquitin-specific processing pr
otease 12) (Deubiquitinating enzyme 12). (Os10t0160000-01);Simil
ar to Ubiquitin carboxyl-terminal hydrolase. (Os10t0160000-02)
Parent gene strand -
Alternative splicing Os10g0160000_circ_g.1 Os10g0160000_circ_g.2 Os10g0160000_circ_g.4 Os10g0160000_circ_g.5 Os10g0160000_circ_g.6 Os10g0160000_circ_g.7 Os10g0160000_circ_g.8
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CT-TA
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAAATAAGGGCAGGGTTCACCTATTCTAAGGAGCAACAATAGATGAACGGACATCATGGAAACA
CATATGTGGTCCTTGCTAACATAATTACAGACTCACagcacaaaaatggaaaccagttccaagg
aatagaatagtagaaaaaagaaaatcactaccatcaaatacatggcatgtatctgaggtaagaa
atctcaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGCACAAAAATGGAAACCAGTTCCAAGGAATAGAATAGTAGAAAAAAGAAAATCACTACCATCA
AATACATGGCATGTATCTGAGGTAAGAAATCTCAATGTCTGTAGCATTTTTTTTGTCAGCTACA
CTAAACTATTCTCACGAATCATAAGCACAAAATTCTCACTAGAACCAAAATTCAAATAAGGGCA
GGGTTCACCTATTCTAAGGAGCAACAATAGATGAACGGACATCATGGAAACACATATGTGGTCC
TTGCTAACATAATTACAGACTCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.121428274
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017