Detail information of 4_circ_ag.4


General Information
CircRNA Name 4_circ_ag.4
ID in PlantcircBase ath_circ_029562
Alias Ath_circ_FC5316
Organism Arabidpsis thaliana
Position chr4: 1472741-1476573  JBrowse»
Reference genome TAIR10.38
Type   ig-circRNA
Identification method circRNA_finder
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 4_circ_ag.6 4_circ_ag.7 4_circ_ag.8 4_circ_ag.9 ENSRNA049493837_circ_g.1 AT4G02980_circ_g.1 AT4G02980_circ_g.2 AT4G02980_circ_g.3 AT4G02990_circ_g.1 AT4G03000_circ_g.1 AT4G03020_circ_g.1 AT4G03020_circ_g.2 AT4G03020_circ_g.3 AT4G03020_circ_g.4 AT4G03050_circ_g.1 AT4G03080_circ_g.1 AT4G03080_circ_g.2 AT4G03080_circ_g.3 AT4G03080_circ_g.4 AT4G03080_circ_g.5 AT4G03080_circ_g.6 AT4G03080_circ_g.7 AT4G03080_circ_g.8 AT4G03080_circ_g.9 AT4G03080_circ_g.10 AT4G03080_circ_g.11 AT4G03080_circ_g.12 AT4G03090_circ_g.1 AT4G03090_circ_g.2 AT4G03110_circ_g.1 AT4G03110_circ_g.2 AT4G03115_circ_g.1 AT4G03120_circ_g.1 AT4G03180_circ_g.1 AT4G03190_circ_g.1 AT4G03200_circ_g.1 AT4G03200_circ_g.2 AT4G03200_circ_g.3 AT4G03200_circ_g.4 AT4G03200_circ_g.5 AT4G03200_circ_g.6 AT4G03200_circ_g.7 AT4G03200_circ_g.8 AT4G03200_circ_g.9 AT4G03200_circ_g.10 AT4G03210_circ_g.1 AT4G03210_circ_g.2 AT4G03210_circ_g.3 AT4G03230_circ_g.1 AT4G03240_circ_g.1 AT4G03250_circ_g.1 AT4G03250_circ_g.2 AT4G03250_circ_g.3 AT4G03260_circ_g.1 AT4G03270_circ_g.1 AT4G03280_circ_g.1 AT4G03280_circ_g.2 AT4G03280_circ_g.3 AT4G03280_circ_g.4 AT4G03280_circ_g.5 AT4G03290_circ_g.1 4_circ_igg.2 4_circ_ag.3 4_circ_ag.5 ENSRNA049493832_circ_g.1 4_circ_ag.2 ENSRNA049493835_circ_g.1 ENSRNA049493835_circ_g.2 ENSRNA049493835_circ_g.3 ENSRNA049493835_circ_g.4 ENSRNA049493835_circ_g.5 ENSRNA049493835_circ_g.6 ENSRNA049493835_circ_g.7 ENSRNA049493835_circ_g.8 AT4G03390_circ_g.1 AT4G03390_circ_g.2 AT4G03390_circ_g.3 AT4G03390_circ_g.4 AT4G03400_circ_g.1 AT4G03400_circ_g.2 AT4G03400_circ_g.3 AT4G03400_circ_g.4 AT4G03410_circ_g.1 AT4G03410_circ_g.2 AT4G03410_circ_g.3 AT4G03410_circ_g.4 AT4G03420_circ_g.1 AT4G03420_circ_g.2 AT4G03420_circ_g.3
Support reads 3
Tissues whole_plant
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTGGTTTCACAGAGCAGCGATTACTTCCCGCTTACAGCAGTGGACGGATCACAGTTTGGCGTC
GCTCAGAACCACTATGGCCTGCTGGTCCGATCTCATatgagcttgtaacccatgtggggacatt
tagatggtggaacactggttcgggtccacgggccggttctgttgttggcatgtttctgggctgc
ccagtcca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATGAGCTTGTAACCCATGTGGGGACATTTAGATGGTGGAACACTGGTTCGGGTCCACGGGCCGG
TTCTGTTGTTGGCATGTTTCTGGGCTGCCCAGTCCAAGCTGTGAGTAAGACGTGTGTGTCAAGC
GAAGGCTTGGCTCAAACGGCTTCTAAAGTTGGAGGGTAATGCGTGAGGCTGGTTTCACAGAGCA
GCGACTACTTCCCGCTTACAGCAGTGGACGGATCACAGTTTAGCGTCGCTCAGAACCACTATGG
CCTGCTGGTCCGATCTCATATGAACCACCATTTTTTTCCTTCTTTTGATTTTGTTTTCCAAAAC
TTTCTACGCTTTTTGTTTATACTTTAAGAGGGAACAAAAGCAAACTTTGAACAAAGCAAGAGAC
GAAGAGTTGTATTATATAGCTTTTGTTCTATGTATGGAAAATATACAAGTTTTATGCTACTCAA
AACTGTGACTTAAGAGTCAAGGTTAAAGAGCCACGAGTAAGATGTGTAGGTATGATCTCAATGG
TATCGTTGTCATCAACACCAACCACCCAGAATGACTGATTCTCTTTCAATACTCTGTTTTTTGT
GTATAAGAAATTACCCTTCTTGAGGCAGCTTTTACTCACCTTCCTCTTCAATCTTCATCAACTC
GTTTCTCAGTTCTTTCACGTTATCGTTCAATAGTTGCAGAGTGTTTTGACGCAATTAGTATTTT
GATTGTTTTTTTGGTTAAGTTTTTGAGTAAAGCAAGAGACTTTACTGTCTTTCTGCCCTGTTTT
ATCAACAAAGATTCAACATTTGGATCTTCATACTTGTTGCTGTAACCCCAGATCATTGAAAAAT
ACCAAAAAAAATGTGAGCTAGACCACCCGATCGTAATGTTTTCTAGAGAATGTACAGAGCTAAT
TTCGAAAAGATGTTAACTCAAGAAGAACTAGTTTCTCTTCTTTTAACAACAACAATATGGAGAC
TGCAAAAAGATGTTAGCTCACTTCTCACGGATAAGCTCAATTGTATCGCCATCAGCAACACGGT
TCCACTTGAATGACTTAGTTTCGATCAATGGTAACTCACTGCTTACCAAGTGAAACGCTTCGTG
AGGCAGATTTAACTCACCCCTCTCTTGCATCTTAACCAGCTCTTTCCTCAGTTCTTCAACGTTG
TCATCTGCGTTAACCTCTACTTGAATCATCTTGGTATCTTCTTGATATGGCTTCACATGTACTG
TAAACTTCATCGGGTTTGTCTTGATCTTCTTTTCCACAGGCGAATCTGAATCTCTAAGGACCTC
TTTGGCTGTGCCTGACGTTGAAGCTTGCTCGGTGGTTTGAACCACTTGATTTGTTCTGCCTCCA
ACCGTCACAGTTGCTGAATATTTAGGGCCAAGTAACTCATCAAGTGAATAAGCCGGTAGTGATG
AATATACATTGTGGACTCTCCTCGCCATCACCCTCGTGAGCTTTTTGCTCTCCGATGAATCTTG
AATGCCACAGAACTCTTGTTTCTTATCATCAATTTGTTTTGATTGCTCGGTTTGCTCGTTGCTC
TGATTAGGGTCAGCATCAGGAGAGATGCGGAGAAGGAGAGATTCGAAGAGGATCATGTAATCAA
TCTTATGAAGATCATCTTCAAGAGCCTTGCCATCCAAGTAAAGGATTTGTTTCGAAACAGGGAT
ACCTTGAGACTTCTCGATCTTCTCTTTTATCTGTAACACTGTTTCGCCGAAATCAATAGTAATG
GAGAACGATGAGCCAGTCTCAGTATCGATGTCCACGTTCATCGTTGTAGTTTCAAGATCAGTGG
AGAGAGACTAAGGAGGAAGAGAGAAAGAGAAACTGATGATTTGTGACGAAAGTTTGTTAATTTC
GTGATTTGGCCGCTTAAATATCACTAGTCAAAGAATTCTAACCGTCGATTTCTCTCCTTACTGA
TATGATCCAACGGTTATTAGTCGCAGAGTGTTTATAAGCAAATTAGTAATGTGATTTTTCTTTG
GTTTTAGTTTTTGAATAAAGCAAGAAACTTTACTGTCTTTTGCTCTGTTTTGTCAATAAAGATT
CAACATTTGATCTTTGTACTAGTGATACATTGAAGTAGTAAAAGAAATGTGAATTAGAATGTAC
ACAGAGCTTATAGTAACTCAACAAGAACTTATTTCTCTTCTTTCAGCTCATATTGGTATTACAT
GTGTTAGGATATTTCAGAAAACTTGAAGAAAGACTAAAACCAATAAGAAAAAGAGTTTAAGATC
GATTAGTGATCAAACGTTCAACCACTAGTGAGTTTAACATATCCTTGGGAAATCTGAATCGTAT
CACCGTAAGCAACACCGTTGGTCAAGAATGACTGATCTTCGTGTAATACAGCCTGCTTATGCTT
GTGTATTAAGTAATACATTCCTTGAGGCAGATTTAACTCACCCCTCTCTTGCATCTTAACCAGC
TCTTTCCTCAGTTCTTCAACGTTATCATCTGCTGTAACCTCTACTTGAATCATCCTGGTATATC
CATATGGCTGCACCATTACTATCATCTTCATCGCAAGCGAGTCTGTAATGTTAATGACCTCTTC
GACTGAGTCTGACGGCGAAGATACTCTGTTTTTAACCTCTTGATCCCTGTTTCTTATGCTCCCA
ACAGCCACAGTCGACGAATCTCGAGGGGCAAGTAACTCATCAAGTGAATATGATGGTCGTGATG
ATCCATTGTCGATTCTCTTCGCCACCACTCTCATTAATGGAGGCCGATCTTGTTGATTCTTACT
GAACTTTTCCATAGTCAAAGCACTTGATTTTGGCGATAATGGAGAATCTTGATTGTTAACGAAC
TCATGAATAGGATTTGATGGTGTTGATGGAGATTGGTTGGTTTGAGGCACTTGGTTCTGAGTAG
GGTTATCGTCAGGAGAGATGGAGAGAAGGATACGAGAGTTGTGACGTATCTGGCATCCAAACAT
ATTAAGATGGTCTTGAAGTACCTTGCGTTTGAAGATAAGTATTTGCTTGGAAACAGGGGTCCCT
TGAGTCATCTCGATCTTCCGTTTAATCATTAACACTGTGTCCCAGAAAGAAACATCAATGGTGA
ACGATGAGCCACTCTGATTCTCGATGATCACCTTTATCATTGTATCATGAATCGGATTTGATGG
AGATTGAGGGACTTGGTTCTGAGTAGGGTTATCGTCAGGAGAGATGGATAGAAGGATACGAGAG
TTGTGGAAGATGCCGTATTCAAACATATCAAGATGATCTTCAAGAAGCTTGCGTTTGAAGAAGA
GTGTTTGATGTTCTCAAGTAAGTGAGTCTTATTGGGAATAATATTAACTCATGTTCTTCTTGCA
TTTGATTTCTTTGCCGCTCTCTTCTTCTATCTCAAATCTGTCTCTTCAATTTCACAGTTGGGCT
TTTTATTAGTCTATAATGGGACTCAAAATAAGGCTTTGGCCCACATCAAAAAGATAAGTCAAAT
GAAAACTAAATTCAGTCTTTTGTCCCACATCGATCACTCTACTCGTTTTGTGTTTGTTTATATA
TTACACGAACCGATCTTCGGTACGTCGAGCGAAGTAACATGAGCTTGTAACCCATGTGGGGACA
TTAAGATGGTGGAACACTGGTTCGGGTCCACGGGCCGGTTCTGTTGCTGGCATGTTTCTGGGCT
GCCCAGTCCAAGCTGTGAGTAAGACGTGTGTGTCAAGCGAAGGCTTGGCTCAAACGGCTGCTAA
AGTTGGAGGGCAATGCGTGAGGCTGGTTTCACAGAGCAGCGATTACTTCCCGCTTACAGCAGTG
GACGGATCACAGTTTGGCGTCGCTCAGAACCACTATGGCCTGCTGGTCCGATCTCAT
Conservation Information
Conserved circRNAs NA
PMCS 0.223119817
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Chen et al., 2017a