Detail information of 4_circ_ag.5


General Information
CircRNA Name 4_circ_ag.5
ID in PlantcircBase ath_circ_029563
Alias 4:1472782-1476436
Organism Arabidpsis thaliana
Position chr4: 1472782-1476436  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method find_circ; CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 4_circ_ag.6 4_circ_ag.7 4_circ_ag.8 4_circ_ag.9 ENSRNA049493837_circ_g.1 AT4G02980_circ_g.1 AT4G02980_circ_g.2 AT4G02980_circ_g.3 AT4G02990_circ_g.1 AT4G03000_circ_g.1 AT4G03020_circ_g.1 AT4G03020_circ_g.2 AT4G03020_circ_g.3 AT4G03020_circ_g.4 AT4G03050_circ_g.1 AT4G03080_circ_g.1 AT4G03080_circ_g.2 AT4G03080_circ_g.3 AT4G03080_circ_g.4 AT4G03080_circ_g.5 AT4G03080_circ_g.6 AT4G03080_circ_g.7 AT4G03080_circ_g.8 AT4G03080_circ_g.9 AT4G03080_circ_g.10 AT4G03080_circ_g.11 AT4G03080_circ_g.12 AT4G03090_circ_g.1 AT4G03090_circ_g.2 AT4G03110_circ_g.1 AT4G03110_circ_g.2 AT4G03115_circ_g.1 AT4G03120_circ_g.1 AT4G03180_circ_g.1 AT4G03190_circ_g.1 AT4G03200_circ_g.1 AT4G03200_circ_g.2 AT4G03200_circ_g.3 AT4G03200_circ_g.4 AT4G03200_circ_g.5 AT4G03200_circ_g.6 AT4G03200_circ_g.7 AT4G03200_circ_g.8 AT4G03200_circ_g.9 AT4G03200_circ_g.10 AT4G03210_circ_g.1 AT4G03210_circ_g.2 AT4G03210_circ_g.3 AT4G03230_circ_g.1 AT4G03240_circ_g.1 AT4G03250_circ_g.1 AT4G03250_circ_g.2 AT4G03250_circ_g.3 AT4G03260_circ_g.1 AT4G03270_circ_g.1 AT4G03280_circ_g.1 AT4G03280_circ_g.2 AT4G03280_circ_g.3 AT4G03280_circ_g.4 AT4G03280_circ_g.5 AT4G03290_circ_g.1 4_circ_igg.2 4_circ_ag.3 4_circ_ag.4 ENSRNA049493832_circ_g.1 4_circ_ag.2 ENSRNA049493835_circ_g.1 ENSRNA049493835_circ_g.2 ENSRNA049493835_circ_g.3 ENSRNA049493835_circ_g.4 ENSRNA049493835_circ_g.5 ENSRNA049493835_circ_g.6 ENSRNA049493835_circ_g.7 ENSRNA049493835_circ_g.8 AT4G03390_circ_g.1 AT4G03390_circ_g.2 AT4G03390_circ_g.3 AT4G03390_circ_g.4 AT4G03400_circ_g.1 AT4G03400_circ_g.2 AT4G03400_circ_g.3 AT4G03400_circ_g.4 AT4G03410_circ_g.1 AT4G03410_circ_g.2 AT4G03410_circ_g.3 AT4G03410_circ_g.4 AT4G03420_circ_g.1 AT4G03420_circ_g.2 AT4G03420_circ_g.3
Support reads 2
Tissues root
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACACTGGTTCGGGTCCACGGGCCGGTTCTGTTGCTGGCATGTTTCTGGGCTGCCCAGTCCAAG
CTGTGAGTAAGACGTGTGTGTCAAGCGAAGGCTTGGactggttcgggtccacgggccggttctg
ttgttggcatgtttctgggctgcccagtccaagctgtgagtaagacgtgtgtgtcaagcgaagg
cttggctc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ACTGGTTCGGGTCCACGGGCCGGTTCTGTTGTTGGCATGTTTCTGGGCTGCCCAGTCCAAGCTG
TGAGTAAGACGTGTGTGTCAAGCGAAGGCTTGGCTCAAACGGCTTCTAAAGTTGGAGGGTAATG
CGTGAGGCTGGTTTCACAGAGCAGCGACTACTTCCCGCTTACAGCAGTGGACGGATCACAGTTT
AGCGTCGCTCAGAACCACTATGGCCTGCTGGTCCGATCTCATATGAACCACCATTTTTTTCCTT
CTTTTGATTTTGTTTTCCAAAACTTTCTACGCTTTTTGTTTATACTTTAAGAGGGAACAAAAGC
AAACTTTGAACAAAGCAAGAGACGAAGAGTTGTATTATATAGCTTTTGTTCTATGTATGGAAAA
TATACAAGTTTTATGCTACTCAAAACTGTGACTTAAGAGTCAAGGTTAAAGAGCCACGAGTAAG
ATGTGTAGGTATGATCTCAATGGTATCGTTGTCATCAACACCAACCACCCAGAATGACTGATTC
TCTTTCAATACTCTGTTTTTTGTGTATAAGAAATTACCCTTCTTGAGGCAGCTTTTACTCACCT
TCCTCTTCAATCTTCATCAACTCGTTTCTCAGTTCTTTCACGTTATCGTTCAATAGTTGCAGAG
TGTTTTGACGCAATTAGTATTTTGATTGTTTTTTTGGTTAAGTTTTTGAGTAAAGCAAGAGACT
TTACTGTCTTTCTGCCCTGTTTTATCAACAAAGATTCAACATTTGGATCTTCATACTTGTTGCT
GTAACCCCAGATCATTGAAAAATACCAAAAAAAATGTGAGCTAGACCACCCGATCGTAATGTTT
TCTAGAGAATGTACAGAGCTAATTTCGAAAAGATGTTAACTCAAGAAGAACTAGTTTCTCTTCT
TTTAACAACAACAATATGGAGACTGCAAAAAGATGTTAGCTCACTTCTCACGGATAAGCTCAAT
TGTATCGCCATCAGCAACACGGTTCCACTTGAATGACTTAGTTTCGATCAATGGTAACTCACTG
CTTACCAAGTGAAACGCTTCGTGAGGCAGATTTAACTCACCCCTCTCTTGCATCTTAACCAGCT
CTTTCCTCAGTTCTTCAACGTTGTCATCTGCGTTAACCTCTACTTGAATCATCTTGGTATCTTC
TTGATATGGCTTCACATGTACTGTAAACTTCATCGGGTTTGTCTTGATCTTCTTTTCCACAGGC
GAATCTGAATCTCTAAGGACCTCTTTGGCTGTGCCTGACGTTGAAGCTTGCTCGGTGGTTTGAA
CCACTTGATTTGTTCTGCCTCCAACCGTCACAGTTGCTGAATATTTAGGGCCAAGTAACTCATC
AAGTGAATAAGCCGGTAGTGATGAATATACATTGTGGACTCTCCTCGCCATCACCCTCGTGAGC
TTTTTGCTCTCCGATGAATCTTGAATGCCACAGAACTCTTGTTTCTTATCATCAATTTGTTTTG
ATTGCTCGGTTTGCTCGTTGCTCTGATTAGGGTCAGCATCAGGAGAGATGCGGAGAAGGAGAGA
TTCGAAGAGGATCATGTAATCAATCTTATGAAGATCATCTTCAAGAGCCTTGCCATCCAAGTAA
AGGATTTGTTTCGAAACAGGGATACCTTGAGACTTCTCGATCTTCTCTTTTATCTGTAACACTG
TTTCGCCGAAATCAATAGTAATGGAGAACGATGAGCCAGTCTCAGTATCGATGTCCACGTTCAT
CGTTGTAGTTTCAAGATCAGTGGAGAGAGACTAAGGAGGAAGAGAGAAAGAGAAACTGATGATT
TGTGACGAAAGTTTGTTAATTTCGTGATTTGGCCGCTTAAATATCACTAGTCAAAGAATTCTAA
CCGTCGATTTCTCTCCTTACTGATATGATCCAACGGTTATTAGTCGCAGAGTGTTTATAAGCAA
ATTAGTAATGTGATTTTTCTTTGGTTTTAGTTTTTGAATAAAGCAAGAAACTTTACTGTCTTTT
GCTCTGTTTTGTCAATAAAGATTCAACATTTGATCTTTGTACTAGTGATACATTGAAGTAGTAA
AAGAAATGTGAATTAGAATGTACACAGAGCTTATAGTAACTCAACAAGAACTTATTTCTCTTCT
TTCAGCTCATATTGGTATTACATGTGTTAGGATATTTCAGAAAACTTGAAGAAAGACTAAAACC
AATAAGAAAAAGAGTTTAAGATCGATTAGTGATCAAACGTTCAACCACTAGTGAGTTTAACATA
TCCTTGGGAAATCTGAATCGTATCACCGTAAGCAACACCGTTGGTCAAGAATGACTGATCTTCG
TGTAATACAGCCTGCTTATGCTTGTGTATTAAGTAATACATTCCTTGAGGCAGATTTAACTCAC
CCCTCTCTTGCATCTTAACCAGCTCTTTCCTCAGTTCTTCAACGTTATCATCTGCTGTAACCTC
TACTTGAATCATCCTGGTATATCCATATGGCTGCACCATTACTATCATCTTCATCGCAAGCGAG
TCTGTAATGTTAATGACCTCTTCGACTGAGTCTGACGGCGAAGATACTCTGTTTTTAACCTCTT
GATCCCTGTTTCTTATGCTCCCAACAGCCACAGTCGACGAATCTCGAGGGGCAAGTAACTCATC
AAGTGAATATGATGGTCGTGATGATCCATTGTCGATTCTCTTCGCCACCACTCTCATTAATGGA
GGCCGATCTTGTTGATTCTTACTGAACTTTTCCATAGTCAAAGCACTTGATTTTGGCGATAATG
GAGAATCTTGATTGTTAACGAACTCATGAATAGGATTTGATGGTGTTGATGGAGATTGGTTGGT
TTGAGGCACTTGGTTCTGAGTAGGGTTATCGTCAGGAGAGATGGAGAGAAGGATACGAGAGTTG
TGACGTATCTGGCATCCAAACATATTAAGATGGTCTTGAAGTACCTTGCGTTTGAAGATAAGTA
TTTGCTTGGAAACAGGGGTCCCTTGAGTCATCTCGATCTTCCGTTTAATCATTAACACTGTGTC
CCAGAAAGAAACATCAATGGTGAACGATGAGCCACTCTGATTCTCGATGATCACCTTTATCATT
GTATCATGAATCGGATTTGATGGAGATTGAGGGACTTGGTTCTGAGTAGGGTTATCGTCAGGAG
AGATGGATAGAAGGATACGAGAGTTGTGGAAGATGCCGTATTCAAACATATCAAGATGATCTTC
AAGAAGCTTGCGTTTGAAGAAGAGTGTTTGATGTTCTCAAGTAAGTGAGTCTTATTGGGAATAA
TATTAACTCATGTTCTTCTTGCATTTGATTTCTTTGCCGCTCTCTTCTTCTATCTCAAATCTGT
CTCTTCAATTTCACAGTTGGGCTTTTTATTAGTCTATAATGGGACTCAAAATAAGGCTTTGGCC
CACATCAAAAAGATAAGTCAAATGAAAACTAAATTCAGTCTTTTGTCCCACATCGATCACTCTA
CTCGTTTTGTGTTTGTTTATATATTACACGAACCGATCTTCGGTACGTCGAGCGAAGTAACATG
AGCTTGTAACCCATGTGGGGACATTAAGATGGTGGAACACTGGTTCGGGTCCACGGGCCGGTTC
TGTTGCTGGCATGTTTCTGGGCTGCCCAGTCCAAGCTGTGAGTAAGACGTGTGTGTCAAGCGAA
GGCTTGG
Conservation Information
Conserved circRNAs NA
PMCS 0.497999636
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020