Detail information of 4_circ_ag.3


General Information
CircRNA Name 4_circ_ag.3
ID in PlantcircBase ath_circ_029561
Alias 4:1472726-1476573
Organism Arabidpsis thaliana
Position chr4: 1472726-1476573  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method find_circ; CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 4_circ_ag.6 4_circ_ag.7 4_circ_ag.8 4_circ_ag.9 ENSRNA049493837_circ_g.1 AT4G02980_circ_g.1 AT4G02980_circ_g.2 AT4G02980_circ_g.3 AT4G02990_circ_g.1 AT4G03000_circ_g.1 AT4G03020_circ_g.1 AT4G03020_circ_g.2 AT4G03020_circ_g.3 AT4G03020_circ_g.4 AT4G03050_circ_g.1 AT4G03080_circ_g.1 AT4G03080_circ_g.2 AT4G03080_circ_g.3 AT4G03080_circ_g.4 AT4G03080_circ_g.5 AT4G03080_circ_g.6 AT4G03080_circ_g.7 AT4G03080_circ_g.8 AT4G03080_circ_g.9 AT4G03080_circ_g.10 AT4G03080_circ_g.11 AT4G03080_circ_g.12 AT4G03090_circ_g.1 AT4G03090_circ_g.2 AT4G03110_circ_g.1 AT4G03110_circ_g.2 AT4G03115_circ_g.1 AT4G03120_circ_g.1 AT4G03180_circ_g.1 AT4G03190_circ_g.1 AT4G03200_circ_g.1 AT4G03200_circ_g.2 AT4G03200_circ_g.3 AT4G03200_circ_g.4 AT4G03200_circ_g.5 AT4G03200_circ_g.6 AT4G03200_circ_g.7 AT4G03200_circ_g.8 AT4G03200_circ_g.9 AT4G03200_circ_g.10 AT4G03210_circ_g.1 AT4G03210_circ_g.2 AT4G03210_circ_g.3 AT4G03230_circ_g.1 AT4G03240_circ_g.1 AT4G03250_circ_g.1 AT4G03250_circ_g.2 AT4G03250_circ_g.3 AT4G03260_circ_g.1 AT4G03270_circ_g.1 AT4G03280_circ_g.1 AT4G03280_circ_g.2 AT4G03280_circ_g.3 AT4G03280_circ_g.4 AT4G03280_circ_g.5 AT4G03290_circ_g.1 4_circ_igg.2 4_circ_ag.4 4_circ_ag.5 ENSRNA049493832_circ_g.1 4_circ_ag.2 ENSRNA049493835_circ_g.1 ENSRNA049493835_circ_g.2 ENSRNA049493835_circ_g.3 ENSRNA049493835_circ_g.4 ENSRNA049493835_circ_g.5 ENSRNA049493835_circ_g.6 ENSRNA049493835_circ_g.7 ENSRNA049493835_circ_g.8 AT4G03390_circ_g.1 AT4G03390_circ_g.2 AT4G03390_circ_g.3 AT4G03390_circ_g.4 AT4G03400_circ_g.1 AT4G03400_circ_g.2 AT4G03400_circ_g.3 AT4G03400_circ_g.4 AT4G03410_circ_g.1 AT4G03410_circ_g.2 AT4G03410_circ_g.3 AT4G03410_circ_g.4 AT4G03420_circ_g.1 AT4G03420_circ_g.2 AT4G03420_circ_g.3
Support reads 1/1/2
Tissues seedling;leaf;flower
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTGGTTTCACAGAGCAGCGATTACTTCCCGCTTACAGCAGTGGACGGATCACAGTTTGGCGTC
GCTCAGAACCACTATGGCCTGCTGGTCCGATCTCATgtcgagctaagtaacatgagcttgtaac
ccatgtggggacatttagatggtggaacactggttcgggtccacgggccggttctgttgttggc
atgtttct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCGAGCTAAGTAACATGAGCTTGTAACCCATGTGGGGACATTTAGATGGTGGAACACTGGTTC
GGGTCCACGGGCCGGTTCTGTTGTTGGCATGTTTCTGGGCTGCCCAGTCCAAGCTGTGAGTAAG
ACGTGTGTGTCAAGCGAAGGCTTGGCTCAAACGGCTTCTAAAGTTGGAGGGTAATGCGTGAGGC
TGGTTTCACAGAGCAGCGACTACTTCCCGCTTACAGCAGTGGACGGATCACAGTTTAGCGTCGC
TCAGAACCACTATGGCCTGCTGGTCCGATCTCATATGAACCACCATTTTTTTCCTTCTTTTGAT
TTTGTTTTCCAAAACTTTCTACGCTTTTTGTTTATACTTTAAGAGGGAACAAAAGCAAACTTTG
AACAAAGCAAGAGACGAAGAGTTGTATTATATAGCTTTTGTTCTATGTATGGAAAATATACAAG
TTTTATGCTACTCAAAACTGTGACTTAAGAGTCAAGGTTAAAGAGCCACGAGTAAGATGTGTAG
GTATGATCTCAATGGTATCGTTGTCATCAACACCAACCACCCAGAATGACTGATTCTCTTTCAA
TACTCTGTTTTTTGTGTATAAGAAATTACCCTTCTTGAGGCAGCTTTTACTCACCTTCCTCTTC
AATCTTCATCAACTCGTTTCTCAGTTCTTTCACGTTATCGTTCAATAGTTGCAGAGTGTTTTGA
CGCAATTAGTATTTTGATTGTTTTTTTGGTTAAGTTTTTGAGTAAAGCAAGAGACTTTACTGTC
TTTCTGCCCTGTTTTATCAACAAAGATTCAACATTTGGATCTTCATACTTGTTGCTGTAACCCC
AGATCATTGAAAAATACCAAAAAAAATGTGAGCTAGACCACCCGATCGTAATGTTTTCTAGAGA
ATGTACAGAGCTAATTTCGAAAAGATGTTAACTCAAGAAGAACTAGTTTCTCTTCTTTTAACAA
CAACAATATGGAGACTGCAAAAAGATGTTAGCTCACTTCTCACGGATAAGCTCAATTGTATCGC
CATCAGCAACACGGTTCCACTTGAATGACTTAGTTTCGATCAATGGTAACTCACTGCTTACCAA
GTGAAACGCTTCGTGAGGCAGATTTAACTCACCCCTCTCTTGCATCTTAACCAGCTCTTTCCTC
AGTTCTTCAACGTTGTCATCTGCGTTAACCTCTACTTGAATCATCTTGGTATCTTCTTGATATG
GCTTCACATGTACTGTAAACTTCATCGGGTTTGTCTTGATCTTCTTTTCCACAGGCGAATCTGA
ATCTCTAAGGACCTCTTTGGCTGTGCCTGACGTTGAAGCTTGCTCGGTGGTTTGAACCACTTGA
TTTGTTCTGCCTCCAACCGTCACAGTTGCTGAATATTTAGGGCCAAGTAACTCATCAAGTGAAT
AAGCCGGTAGTGATGAATATACATTGTGGACTCTCCTCGCCATCACCCTCGTGAGCTTTTTGCT
CTCCGATGAATCTTGAATGCCACAGAACTCTTGTTTCTTATCATCAATTTGTTTTGATTGCTCG
GTTTGCTCGTTGCTCTGATTAGGGTCAGCATCAGGAGAGATGCGGAGAAGGAGAGATTCGAAGA
GGATCATGTAATCAATCTTATGAAGATCATCTTCAAGAGCCTTGCCATCCAAGTAAAGGATTTG
TTTCGAAACAGGGATACCTTGAGACTTCTCGATCTTCTCTTTTATCTGTAACACTGTTTCGCCG
AAATCAATAGTAATGGAGAACGATGAGCCAGTCTCAGTATCGATGTCCACGTTCATCGTTGTAG
TTTCAAGATCAGTGGAGAGAGACTAAGGAGGAAGAGAGAAAGAGAAACTGATGATTTGTGACGA
AAGTTTGTTAATTTCGTGATTTGGCCGCTTAAATATCACTAGTCAAAGAATTCTAACCGTCGAT
TTCTCTCCTTACTGATATGATCCAACGGTTATTAGTCGCAGAGTGTTTATAAGCAAATTAGTAA
TGTGATTTTTCTTTGGTTTTAGTTTTTGAATAAAGCAAGAAACTTTACTGTCTTTTGCTCTGTT
TTGTCAATAAAGATTCAACATTTGATCTTTGTACTAGTGATACATTGAAGTAGTAAAAGAAATG
TGAATTAGAATGTACACAGAGCTTATAGTAACTCAACAAGAACTTATTTCTCTTCTTTCAGCTC
ATATTGGTATTACATGTGTTAGGATATTTCAGAAAACTTGAAGAAAGACTAAAACCAATAAGAA
AAAGAGTTTAAGATCGATTAGTGATCAAACGTTCAACCACTAGTGAGTTTAACATATCCTTGGG
AAATCTGAATCGTATCACCGTAAGCAACACCGTTGGTCAAGAATGACTGATCTTCGTGTAATAC
AGCCTGCTTATGCTTGTGTATTAAGTAATACATTCCTTGAGGCAGATTTAACTCACCCCTCTCT
TGCATCTTAACCAGCTCTTTCCTCAGTTCTTCAACGTTATCATCTGCTGTAACCTCTACTTGAA
TCATCCTGGTATATCCATATGGCTGCACCATTACTATCATCTTCATCGCAAGCGAGTCTGTAAT
GTTAATGACCTCTTCGACTGAGTCTGACGGCGAAGATACTCTGTTTTTAACCTCTTGATCCCTG
TTTCTTATGCTCCCAACAGCCACAGTCGACGAATCTCGAGGGGCAAGTAACTCATCAAGTGAAT
ATGATGGTCGTGATGATCCATTGTCGATTCTCTTCGCCACCACTCTCATTAATGGAGGCCGATC
TTGTTGATTCTTACTGAACTTTTCCATAGTCAAAGCACTTGATTTTGGCGATAATGGAGAATCT
TGATTGTTAACGAACTCATGAATAGGATTTGATGGTGTTGATGGAGATTGGTTGGTTTGAGGCA
CTTGGTTCTGAGTAGGGTTATCGTCAGGAGAGATGGAGAGAAGGATACGAGAGTTGTGACGTAT
CTGGCATCCAAACATATTAAGATGGTCTTGAAGTACCTTGCGTTTGAAGATAAGTATTTGCTTG
GAAACAGGGGTCCCTTGAGTCATCTCGATCTTCCGTTTAATCATTAACACTGTGTCCCAGAAAG
AAACATCAATGGTGAACGATGAGCCACTCTGATTCTCGATGATCACCTTTATCATTGTATCATG
AATCGGATTTGATGGAGATTGAGGGACTTGGTTCTGAGTAGGGTTATCGTCAGGAGAGATGGAT
AGAAGGATACGAGAGTTGTGGAAGATGCCGTATTCAAACATATCAAGATGATCTTCAAGAAGCT
TGCGTTTGAAGAAGAGTGTTTGATGTTCTCAAGTAAGTGAGTCTTATTGGGAATAATATTAACT
CATGTTCTTCTTGCATTTGATTTCTTTGCCGCTCTCTTCTTCTATCTCAAATCTGTCTCTTCAA
TTTCACAGTTGGGCTTTTTATTAGTCTATAATGGGACTCAAAATAAGGCTTTGGCCCACATCAA
AAAGATAAGTCAAATGAAAACTAAATTCAGTCTTTTGTCCCACATCGATCACTCTACTCGTTTT
GTGTTTGTTTATATATTACACGAACCGATCTTCGGTACGTCGAGCGAAGTAACATGAGCTTGTA
ACCCATGTGGGGACATTAAGATGGTGGAACACTGGTTCGGGTCCACGGGCCGGTTCTGTTGCTG
GCATGTTTCTGGGCTGCCCAGTCCAAGCTGTGAGTAAGACGTGTGTGTCAAGCGAAGGCTTGGC
TCAAACGGCTGCTAAAGTTGGAGGGCAATGCGTGAGGCTGGTTTCACAGAGCAGCGATTACTTC
CCGCTTACAGCAGTGGACGGATCACAGTTTGGCGTCGCTCAGAACCACTATGGCCTGCTGGTCC
GATCTCAT
Conservation Information
Conserved circRNAs NA
PMCS 0.279935912
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020