Detail information of BGIOSGA003294_circ_ag.2


General Information
CircRNA Name BGIOSGA003294_circ_ag.2
ID in PlantcircBase osi_circ_009012
Alias Chr11:5370151_5379405(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr1: 11316339-11325593  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA003293_circ_ag.1 BGIOSGA003293_circ_ag.2 BGIOSGA003294_circ_ag.1 BGIOSGA003295_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   TA-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGCAATATCAGGACACCTTGAGACAGTTGAAATCAGATGTGAAGTGGTTGATAAGAGAGTACT
CAAAGTTTTGAAGTACCTGTCTACATTTAACATACGtttttagttttaaggaaatcgagatttt
ggaaggatatgacaatgaccaggacgaagtggaggaagatgaagatgaggactctcatgaagac
gaagacga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs osa_circ_008778
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021